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Record W4410222177 · doi:10.1101/2025.05.07.25327065

<i>APOE</i> stratified genome-wide association studies provide novel insights into the genetic etiology of Alzheimers’s disease

2025· preprint· en· W4410222177 on OpenAlexaff
Jesper Qvist Thomassen, Hampton L. Leonard, Brittany Ulms, Benjamin Grenier‐Boley, Sami Heikkinen, Pablo García‐González, Masataka Kikuchi, Jungsoo Gim, Han Cao, Fahri Küçükali, Najaf Amin, Dabin Yoon, Itziar de Rojas, Pilar Álvarez Jerez, Victoria Álvarez, Beatrice Arosio, Céline Bellenguez, Sverre Bergh, Kimberly J Billingsley, Cornelis Blauwendraat, Merçé Boada, Barbara Borroni, Paola Bossù, María J. Bullido, Antonio Daniele, Ángel Carracedo, Alexandre de Mendonça, Mark Cookson, Jürgen Deckert, Martin Dichgans, Srdjan Djurovic, Oriol Dols‐Icardo, Carole Dufouil, Emrah Düzel, Valentina Escott‐Price, Tormod Fladby, Laura Fratiglioni, Amy K.Y. Fu, Daniela Galimberti, José María García‐Alberca, Vilmantas Giedraitis, Guillermo García‐Ribas, Caroline Graff, Timo Grimmer, Edna Grünblatt, Olivier Hanon, Lucrezia Hausner, Stefanie Heilmann‐Heimbach, Jakub Hort, Frank Jessen, Kendall Van Keuren‐Jensen, Caroline Jonson, Y. Kim, Nicole Kuznetsov, Ville Leinonen, Anssi Lipponen, Jiao Luo, Mary B. Makarious, Henna Martiskainen, Carlo Masullo, Patrizia Mecocci, Shima Mehrabian, Pablo Mir, Akinori Miyashita, Susanne Moebus, Kin Y. Mok, Laura Molina‐Porcel, Fermín Moreno, Benedetta Nacmias, Lucilla Parnetti, Pau Pástor, Jordi Pérez‐Tur, Oliver Peters, Yolande A.L. Pijnenburg, Gerard Piñol‐Ripoll, Julius Popp, Innocenzo Rainero, Luís Miguel Real, Steffi G. Riedel‐Heller, Eloy Rodríguez‐Rodríguez, Arvid Rongve, Giacomina Rossi, José Luís Royo, Dan Rujescu, Ingvild Saltvedt, María Eugenia Sáez, Raquel Sánchez‐Valle, Florentino Sánchez-García, Nicolai Sandau, Nikolaos Scarmeas, Katja Scheffler, Norbert Scherbaum, Anja Schneider, Geir Selbæk, Davide Seripa, Vincenzo Solfrizzi, Marco Spallazzi, Alessio Squassina, Eystein Stordal, Niccoló Tesi, Lucio Tremolizzo, Kumar Parijat Tripathi, Wiesje M. van der Flier, Julie Williams, Jens Wiltfang, Dag Aarsland, Andrew Singleton, Philippe Amouyel, Stéphanie Debette, Gaël Nicolas, Sven J. van der Lee, Henne Holstege, María Victoria Fernández, Patrick G. Kehoe, Kristel Sleegers, Martin Ingelsson, Roberta Ghidoni, Ole A. Andreassen, Peter Holmans, Pascual Sánchez‐Juan, Rebecca Sims, Nancy Y. Ip, Kun Ho Lee, Takeshi Ikeuchi, Alfredo Ramı́rez, Agustı́n Ruiz, Mikko Hiltunen, Jean‐Charles Lambert, Cornelia M. van Duijn, Mike A. Nalls, Ruth Frikke‐Schmidt

Bibliographic record

VenuemedRxiv · 2025
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic Associations and Epidemiology
Canadian institutionsOntario Brain InstituteUniversity of TorontoUniversity Health Network
FundersNational Institute for Health and Care ResearchUniversité de LilleNational Institutes of HealthH. Lundbeck A/SLundbeckfondenDevelopment of Innovative Strategies for a Transdisciplinary approach to ALZheimer's diseaseZonMwInstitut National de la Santé et de la Recherche MédicaleUniversity of OxfordHjerteforeningen
KeywordsEtiologyAlzheimer's diseaseApolipoprotein EDiseaseGenome-wide association studyGenetic associationAssociation (psychology)BiologyMedicineGeneticsEvolutionary biologyComputational biologyPathologyGenotypePsychologyGeneSingle-nucleotide polymorphism

Abstract

fetched live from OpenAlex

Among the more than 90 identified genetic risk loci for late-onset Alzheimer’s disease (AD) and related dementias, the apolipoprotein E gene ( APOE ) ɛ2/ɛ3/ɛ4 polymorphisms remains the longstanding benchmark for genetic disease risk with a consistently large effect across studies 1–10 . Despite this massive signal, the exact mechanisms for how ɛ4 increases and for how ɛ2 decreases dementia risk is not well-understood. Importantly, recent trials of anti-amyloid therapies suggest less efficacy and higher risks of severe side effects in ε4 carriers 11–13 , hampering the treatment of those with the highest unmet need. To improve our understanding of the genetic architecture of AD in the context of its main genetic driver, we performed genome-wide association studies (GWASs) stratified by ε4 and ε2 carrier status. Such insights may help to understand and overcome side effects, to impact clinical trial enrolment strategies, and to create the scientific basis for targeted mechanism-driven therapies in neurodegenerative diseases.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.005
metaresearch head score (Gemma)0.012
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.019
Threshold uncertainty score0.065

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0050.012
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.003
Science and technology studies0.0000.001
Scholarly communication0.0020.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0190.007

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.028
GPT teacher head0.292
Teacher spread0.264 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2025
Admission routes1
Has abstractyes

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Same venuemedRxiv→Same topicGenetic Associations and Epidemiology→French-language works237,207→