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Record W4410606990 · doi:10.1111/nph.70209

Silent invaders: the hidden threat of asymptomatic phytobiomes to forest biosecurity

2025· review· en· W4410606990 on OpenAlexafffund
Joey B. Tanney, Martin Kemler, María Vivas, Michael J. Wingfield, Bernard Slippers

Bibliographic record

VenueNew Phytologist · 2025
Typereview
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant Pathogens and Fungal Diseases
Canadian institutionsNatural Resources CanadaCanadian Forest Service
FundersNatural Resources CanadaU.S. Forest ServiceCanadian Forest ServiceCanadian Food Inspection Agency
KeywordsBiosecurityBiologyEcologyForest ecologyEcosystemForest healthEnvironmental resource managementAgroforestry

Abstract

fetched live from OpenAlex

Populations of diverse, unknown, and potentially pathogenic fungi and fungus-like organisms are continuously introduced into new locations via asymptomatic infections (e.g. as endophytes or latent pathogens) within internationally traded live plants. Interactions between these asymptomatic fungi and novel recipient host trees can be unpredictable, and urban introductions may act as bridgeheads into natural and managed forests. Historical examples of novel, highly destructive forest tree diseases highlight the potential threat of this pathway. As the trade in live plants continues to expand, the likelihood of high-impact incursions increases. This has led to calls for more proactive management, including more stringent treatment and regulatory standards, and even the phasing out of trade in plants determined to be an untenable risk to forest ecosystems. In this review, we discuss how biosecurity systems should consider advances in understanding the diversity and ecology of phytobiomes associated with asymptomatic plants and what measures can be considered to reduce this threat to global forest health.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.004
Threshold uncertainty score0.013

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.002
Science and technology studies0.0000.001
Scholarly communication0.0020.002
Open science0.0010.001
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0040.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.033
GPT teacher head0.312
Teacher spread0.279 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations9
Published2025
Admission routes2
Has abstractyes

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