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Record W4411042727 · doi:10.1186/s12870-025-06773-7

Core construction establishment for Ruchengbaimao tea based on SSR markers

2025· article· en· W4411042727 on OpenAlexaff
Yiming Liu, Yiting Zhang, Xinyi Zhang, Xiaoqin Yi, Feixiong Luo, Haitao Wen, Peidi Yang, Jianan Huang, Zhonghua Liu, Juan Li, Ligui Xiong

Bibliographic record

VenueBMC Plant Biology · 2025
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicFood Quality and Safety Studies
Canadian institutionsMinistry of Education and Child Care
FundersNational Key Research and Development Program of ChinaChina Agricultural Research SystemNational Natural Science Foundation of China
KeywordsBiologyBiotechnologyComputational biology

Abstract

fetched live from OpenAlex

Germplasm collection and conservation requires many efforts and resources. Core collection construction could both conserve genetic diversity and improve conservation efficiency. This study investigated the genetic diversity of tea plants [ Camellia sinensis (L.) O. Kuntze] collected from four regions of Rucheng using 14 simple sequence repeat (SSR) markers and constructed a core collection set. A phylogenetic tree and population structure were conducted. A core set of 28 tea plants, approximately 10% of 279 tea plant individuals, was constructed to capture the samples' maximum genetic diversity. Compared to the original collection, the retention rates of N a , I , H o , H e , MAF, and PIC in the core collection were 106.4%, 118.8%, 103.1%, 112.2%, 68.1%, and 113.1%, respectively. The significance of core germplasm lies in identifying and conserving a set of representatives, diverse, and genetically advantageous genetic resources to support subsequent genetic improvement and breeding efforts. It could serve as a foundation for conserving valuable genetic materials and identifying loci associated with important horticultural traits, thereby empowering the development of new tea cultivars with enhanced efficiency. Furthermore, this approach contributes to optimizing breeding strategies, accelerating the selection process, and ensuring the sustainability of tea plant genetic resources for future generations.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.010

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.002
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0030.002
Science and technology studies0.0010.000
Scholarly communication0.0010.001
Open science0.0010.002
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.071
GPT teacher head0.279
Teacher spread0.207 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations6
Published2025
Admission routes1
Has abstractyes

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