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Record W4411363508 · doi:10.1101/2025.06.16.657725

Image-Based Meta- and Mega-Analysis (IBMMA): A Unified Framework for Large-Scale, Multi-Site, Neuroimaging Data Analysis

2025· preprint· en· W4411363508 on OpenAlexaff
N. C. Steele, Rajendra A. Morey, Ahmed Hussain, Courtney Russell, Benjamin Suarez‐Jimenez, Elena Pozzi, Hadis Jameei, Lianne Schmaal, Ilya M. Veer, Lea Waller, Neda Jahanshad, Sophia I. Thomopoulos, Lauren E. Salminen, Miranda Olff, Jessie L. Frijling, Dick J. Veltman, Saskia B.J. Koch, Laura Nawijn, Mirjam van Zuiden, Li Wang, Ye Zhu, Gen Li, Dan J. Stein, Jonathan Ipser, Yuval Neria, Xi Zhu, Orren Ravid, Sigal Zilcha‐Mano, Amit Lazarov, Ashley A. Huggins, Jennifer S. Stevens, Kerry J. Ressler, Tanja Jovanović, Sanne J.H. van Rooij, Negar Fani, Sven C. Mueller, Anna R. Hudson, Judith K. Daniels, Anika Sierk, Antje Manthey, Henrik Walter, Nic J.A. van der Wee, Steven J.A. van der Werff, Robert Vermeiren, Christian Schmahl, Julia Herzog, Ivan Rektor, Pavel Říha, Milissa L. Kaufman, Lauren A. M. Lebois, Justin T. Baker, Isabelle M. Rosso, Elizabeth A. Olson, Anthony King, Israel Liberzon, Nicholas D. Davenport, Seth G. Disner, Scott R. Sponheim, Thomas Straube, David Hofmann, Guangming Lu, Rongfeng Qi, Xin Wang, Austin Kunch, Hong Xie, Yann Quidé, Wissam El‐Hage, Shmuel Lissek, Hannah Berg, Steven E. Bruce, Josh M. Cisler, Marisa Ross, Ryan J. Herringa, Daniel W. Grupe, Jack B. Nitschke, Richard J. Davidson, Christine Larson, Terri A. deRoon‐Cassini, Carissa W. Tomas, Jacklynn M. Fitzgerald, Jeremy A. Elman, Matthew S. Panizzon, Carol E. Franz, Michael J. Lyons, William S. Kremen, Brandee Feola, Jennifer Urbano Blackford, Bunmi O. Olatunji, Geoffrey May, Evan M. Gordon, Chadi G. Abdallah, Ruth A. Lanius, Maria Densmore, Jean Théberge, Richard W. J. Neufeld, Paul M. Thompson, Delin Sun

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2025
Typepreprint
Languageen
FieldNeuroscience
TopicFunctional Brain Connectivity Studies
Canadian institutionsWestern University
Fundersnot available
KeywordsNeuroimagingMeta-analysisMega-Scale (ratio)Computer scienceData scienceData miningPsychologyGeographyCartographyNeuroscienceMedicine

Abstract

fetched live from OpenAlex

The increasing scale and complexity of neuroimaging datasets aggregated from multiple study sites present substantial analytic challenges, as existing statistical analysis tools struggle to handle missing voxel-data, suffer from limited computational speed and inefficient memory allocation, and are restricted in the types of statistical designs they are able to model. We introduce Image-Based Meta- & Mega-Analysis (IBMMA), a novel software package implemented in R and Python that provides a unified framework for analyzing diverse neuroimaging features, efficiently handles large-scale datasets through parallel processing, offers flexible statistical modeling options, and properly manages missing voxel-data commonly encountered in multi-site studies. IBMMA produced stronger effect sizes and revealed findings in brain regions that traditional software overlooked due to missing voxel-data resulting in gaps in brain coverage. IBMMA has the potential to accelerate discoveries in neuroscience and enhance the clinical utility of neuroimaging findings.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.069
metaresearch head score (Gemma)0.166
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: Methods · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.931
Threshold uncertainty score0.366

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0690.166
Meta-epidemiology (narrow)0.0050.004
Meta-epidemiology (broad)0.0060.013
Bibliometrics0.0110.010
Science and technology studies0.0020.003
Scholarly communication0.0070.004
Open science0.0090.009
Research integrity0.0030.007
Insufficient payload (model declined to judge)0.0170.005

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.079
GPT teacher head0.306
Teacher spread0.227 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designSimulation or modeling
DomainMethods
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2025
Admission routes1
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)→Same topicFunctional Brain Connectivity Studies→French-language works237,207→