A Draft Genome Assembly for <i>Diaporthe humulicola</i> , the Causal Agent of Halo Blight of Hop
Bibliographic record
Abstract
Diaporthe humulicola is the causal agent of halo blight in hop. Halo blight is a major concern in the Northeastern United States and Canada, capable of causing significant yield loss in hop yards. Although there are currently two genomes deposited in GenBank under the name “ Diaporthe humulicola,” a four-gene maximum likelihood phylogeny shows that this genome is not the same species as previously described D. humulicola isolates but is likely a novel species within the Diaporthe genus. In this study, we report a draft genome for D. humulicola that was assembled with both long- and short-read sequences. The draft genome consists of 49.82 megabases assembled into 180 contigs, with a GC content of 51.2%. The genome was annotated, and 11,773 genes were predicted, including 2,752 genes with common names. This paper represents the first genomic resource for D. humulicola. [Formula: see text] Copyright © 2025 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .
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How this classification was reachedexpand
Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.000 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one teacher head, not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".