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Record W4411679986 · doi:10.1093/emph/eoaf009

A test of the Archaic <i>Homo</i> Introgression Hypothesis for the Chiari malformation type I

2025· article· en· W4411679986 on OpenAlexafffund
Kimberly A. Plomp, Daniel Lewis, Laura T. Buck, Shafqat Bukhari, Todd C. Rae, Kanna Gnanalingham, Mark Collard

Bibliographic record

VenueEvolution Medicine and Public Health · 2025
Typearticle
Languageen
FieldMedicine
TopicSpinal Dysraphism and Malformations
Canadian institutionsSimon Fraser University
FundersH2020 Marie Skłodowska-Curie ActionsOffice of the Chancellor, University of California, Los AngelesEuropean CommissionBritish Columbia Knowledge Development FundCanada Research ChairsOffice of the Vice Chancellor for Research and InnovationCanada Foundation for Innovation
KeywordsIntrogressionTest (biology)MedicineBiologyGeneticsGeneEcology

Abstract

fetched live from OpenAlex

Abstract The Chiari malformation type I (CM-I) is a herniation of the cerebellum through the foramen magnum. Its proximate cause is accepted to be an unusually small occipital bone. However, its ultimate cause remains unclear. In 2013, Fernandes and colleagues hypothesized that individuals develop CM-I because some of their cranial development-coding genes derive from three extinct Homo species that have smaller basicrania than is typical for modern humans—Homo erectus, Homo heidelbergensis, and Homo neanderthalensis. Here, we report a study in which we used 3D data and Geometric Morphometrics to evaluate this hypothesis. We began by investigating whether CM-I is associated with significant differences in cranial shape in a sample of living humans. Subsequently, we compared the crania of living humans with and without CM-I to fossil crania assigned to H. erectus, H. heidelbergenesis, H. neanderthalensis, and H. sapiens. The study’s results were mixed. The first set of analyses identified significant shape differences between the crania of people with CM-I and the crania of unaffected people, which is in line with the hypothesis. In contrast, the second set of analyses did not support the hypothesis. They indicated that the crania of living humans with CM-I are only closer in shape to one of the extinct species, H. neanderthalensis. The other two extinct species were found to be closer in shape to living humans without CM-I. This is contrary to the main prediction of the hypothesis. Together, our results suggest the hypothesis should be narrowed to focus on introgressed genes from Neanderthals.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.916
Threshold uncertainty score0.300

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.047
GPT teacher head0.330
Teacher spread0.283 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2025
Admission routes2
Has abstractyes

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