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Record W4411690851 · doi:10.1134/s1022795425700255

Exonic Deletion in MAN1B1 and a Missense Substitution in CAPN10 Causes Truncal Obesity, Type 2 Diabetes, Delayed Motor Development and Mild Intellectual Disability

2025· article· en· W4411690851 on OpenAlexaff
Sara Naudhani, Fariya Khan Bazai, Azlina Ahmad, Hamnah Tayyab, M. T. Pervez, Amna Zafar, S. A. Shah, N. Raheem, Muhammad Tariq, Murtaza Saleem, Rehan Sheikh, Shakeela Daud

Bibliographic record

VenueRussian Journal of Genetics · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCalpain Protease Function and Regulation
Canadian institutionsAmorfix (Canada)McMaster University
Fundersnot available
KeywordsMissense mutationBiologyType 2 diabetesObesitySubstitution (logic)GeneticsHuman geneticsBioinformaticsEndocrinologyGeneMutationDiabetes mellitus

Abstract

fetched live from OpenAlex

Abstract The Mannosidase Alpha class 1B member 1 (MAN1B1) Gene encodes the endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase (ERManI) protein, which is thought to be crucial for the degradation of misfolded glycoproteins. Although there were differences in clinical features across individuals, but most patients reported had truncal obesity, facial dysphormaties, and mild to moderate intellectual disability. While the CAPN10 gene encodes cysteine protease calpain-10 is an intracellular protease (calcium-dependent) expressed ubiquitously in several tissues and involved in secretions of pancreatic β-cell insulin, translocating glucose transporter 4 to the cell membrane of adipocytes and thermogenesis. Genetic variants in CAPN10 cause diabetes type II (T2DM), obesity, and mild to moderate intellectual disability. Here, we describe the affected individuals of two different Pakistani families segregating with syndromic disorders showing clinical features of truncal obesity, motor developmental delay, and mild intellectual disability in one of the families while obesity, diabetes, and mildintellectual disability in the other family. Whole exome sequencing and Sanger sequencing led to identification of 22 bp exonic deletion in MAN1B1 (c.1833_1854del; Asp613Alafs*108) and a homozygous missense substitution in CAPN10 (c.136C>G; p.Pro46Ala). Our results not only expand the mutational spectrum of MAN1B1 and CAPN10, but also provide deeper insights by documenting clinical features and genetics findings and would prove to be a valuable addition to genetic diagnostics procedures.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.267
Threshold uncertainty score0.361

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.239
Teacher spread0.230 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

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