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Record W4412065783 · doi:10.1101/2025.07.03.663014

Dissecting specialized metabolism in space: A MALDI-MSI atlas of Amaryllidaceae alkaloids in <i>Hippeastrum papilio</i> (Ravenna) Van Scheepen

2025· preprint· en· W4412065783 on OpenAlexafffund
Nuwan Sameera Liyanage, Natacha Mérindol, Kenneth Munk Pedersen, Christian Janfelt, Isabel Desgagné‐Penix

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2025
Typepreprint
Languageen
FieldChemistry
TopicChemical synthesis and alkaloids
Canadian institutionsUniversité du Québec à Trois-Rivières
FundersNatural Sciences and Engineering Research Council of CanadaCanada Research Chairs
KeywordsRavennaAmaryllidaceaeBotanyBiologyComputer science

Abstract

fetched live from OpenAlex

Abstract Amaryllidoideae produce specific specialized metabolites known as Amaryllidaceae alkaloids (AAs), extensively studied for their significant pharmacological potential. AAs’ spatial distribution and biosynthesis within plant tissues remain poorly understood. This study investigates organ- and tissue-specific localization in Hippeastrum papilio , from precursors to galanthamine and haemanthamine, using matrix-assisted laser desorption/ionization mass spectrometry imaging. Consistent accumulation of AAs was observed in epidermal and vascular tissues, with leaves exhibiting a uniform distribution across all ages and positions. Bulbs exhibited higher concentrations in the outer-scales and basal-plates, while roots displayed compartmentalized patterns, with galanthamine being uniquely abundant in the vascular bundles. Haemanthamine and galanthamine were detected in high quantities in the leaves’ and bulbs’ mucilage, while precursors were scarce. Multivariate analyses revealed that precursors clustered separately from end-products and were specifically enriched in the middle-scales and apical-leaves of the bulbs. Nonetheless, biosynthetic intermediates were observed in all tissues, indicating widespread AA biosynthesis across all organs. These findings suggest a coordinated metabolic network in H . papilio , which challenges existing hypotheses on organ-specific AA biosynthesis and hints at the transport of end-products. This study refines current models of alkaloid biosynthesis and underscore the value of H. papilio as a promising resource for sustainable production of therapeutic AAs. Highlights MALDI-MSI reveals widespread, tissue-specific alkaloid distribution in Hippeastrum papilio, challenging organ-specific biosynthesis and implicating epidermal and vascular tissues in Amaryllidaceae alkaloid production.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Research integrity, Insufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.021
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0020.001
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.002
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.219
Teacher spread0.210 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2025
Admission routes2
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)Same topicChemical synthesis and alkaloidsFrench-language works237,207