MétaCan
Menu
Back to cohort
Record W4412583457 · doi:10.1002/mdc3.70236

Paroxysmal Dyskinesia with a Novel Variant in the Histone 3 Family <scp>3B</scp> ( <scp>H3</scp> ‐ <scp>3B</scp> ) Gene

2025· article· en· W4412583457 on OpenAlexaff
Gianluca D’Onofrio, Sébastien Perreault, Grant A. Mitchell, Inge A. Meijer

Bibliographic record

VenueMovement Disorders Clinical Practice · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetics and Neurodevelopmental Disorders
Canadian institutionsUniversité de MontréalCentre Hospitalier Universitaire Sainte-Justine
Fundersnot available
KeywordsParoxysmal dyskinesiaGeneticsBiologyDyskinesiaMedicineParkinson's diseaseDiseaseInternal medicine

Abstract

fetched live from OpenAlex

Heterozygous germline deleterious variants in the Histone 3 Family 3A and 3B genes H3-3A and H3-3B cause a neurodevelopmental disorder, characterized by developmental delay (DD)/intellectual disability (ID) and nonspecific craniofacial abnormalities.1 Here we report a 13-year-old female with the previously undescribed phenotype of paroxysmal dyskinesia (PxD) and a de novo variant in H3-3B. A 13-year-old female was referred for episodes of PxD. She was born to non-consanguineous parents, with no family history of movement disorders (MDs). She presented a history of DD, starting to walk at 2 years of age and experiencing language delay. Since the age of 6 years old, she has experienced paroxysmal episodes of hyperventilation followed by dystonic posturing mainly on the right side of her body, accompanied by choreiform movements of the face and arms (Video 1). The episodes mostly occurred in the morning, lasting from a few seconds to a minute, with over 50 episodes a day. Speaking became difficult during more severe episodes. Episodes were more frequent in the mornings and triggered mainly by strong emotions, such as excitement or frustrations and sometimes by voluntary movements, such as getting up. No nocturnal episodes were reported. She had appendicular hypotonia, ligamentous laxity, and bucco-lingual apraxia. The rest of the examination was normal with no MDs between episodes. A diagnosis of PxD was made at the age of 8. Carbamazepine up to a dosage of 400 mg/day resulted in no improvement. Clonazepam (maximum 0.75 mg/day) initially reduced episode frequency and intensity but lost effectiveness over time and was discontinued. Similarly, trials with L-dopa (75 mg/day), Trihexyphenidyl (15 mg/day), Acetazolamide (375 mg/day), and Levetiracetam (1250 mg/day) were ineffective. Interestingly, she had a sustained partial benefit to Topiramate (TPM) with a more than 50% reduction in the frequency of episodes. Currently, the patient takes 130 mg/day of TPM. With this treatment, episodes occur about 3–4 times a day (versus over 50 episodes a day pre-treatment), lasting an average of 10 s. Biochemical diagnostic testing was normal in blood (transaminases, uric acid, electrolytes, TSH, copper, ceruloplasmin, vitamin B12, folate, amino acids, lactate, ammonia) and cerebrospinal fluid (lactate, pyruvate, glucose, protein, amino acids and neurotransmitter metabolites). Brain magnetic resonance imaging (MRI) at 8 years of age showed a non-specific hyperintense T2/FLAIR lesion in the deep right-parietal white matter of unclear significance. The basal ganglia were normal, as was brain magnetic resonance spectroscopy. Routine awake EEG and a 4-h monitoring, which captured multiple episodes of dyskinesia, were normal. Trio exome analysis revealed a heterozygous de novo variant, c.109A>G (p.Lys37Glu), in H3.3B (NM_005324.5). This variant was designated as likely pathogenic because it fulfills criteria PS2, PM2 and PP3 of the consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. It was documented to be de novo (PS2), is absent in large population databases ExAc and 1000 Genomes (PM2) and multiple computational programs (SIFT, Polyphen-2, MutationTaster and CADD) concluded that it is disruptive (PP3): lysine 109 is evolutionarily conserved and the variant substitutes the negatively-charged amino acid lysine with a positively charged one, glutamic acid. The H3-3A and H3-3B genes are located on chromosomes 1q42.12 and 17q25.1, respectively, and encode proteins with identical protein sequences.1 The c.109A>G variant occurs in the Lysine 37 codon of H3-3B. Confusingly, because the methionine 1 residue of histones is removed nearly immediately after transcription, the variant residue is typically designated lysine 36 (K36) in histone research. K36 is well documented to undergo trimethylation, an important epigenetic modification.2 Intriguingly, an identical paralogous K36E substitution was described in H3-3A, among the original description of H3-3A and H3-3B-related neurodevelopmental disorder.1 We report a video-documented case of H3-3B-related neurodevelopmental disorder associated with PxD. The phenotype blurs the traditional classification between paroxysmal kinesiogenic versus paroxysmal non kinesiogenic dyskinesia. Interestingly, among 97 H3-3A and H3-3B-related neurodevelopmental disorder cases published to date,1, 3-6 dystonia was previously reported in four and oral dyskinesias in two (Table 1). H3.3A and H3.3B may therefore be emerging genes for MDs, the prevalence of which may be underestimated. A recent review of the phenotypic spectrum of H3-3A and H3-3B-related neurodevelopmental disorder3 emphasize the importance of repeated phenotyping due to the lack of longitudinal follow-up for most individuals, considering this disorder as a possible neurodegenerative condition. Interestingly, in three of the seven patients associated with MDs (including our case), the initial manifestations appear to be asymmetric, and, in one of these (H3-3B c.440C>A, p.Ser147Ter),1 MRI showed progressive reduction of the volume of the putamen and caudate on one side. Additionally, although PxD are relatively uncommon among NDDs, an increasing number of NDD-associated genes, such as KCNMA1, ATP1A3, ADCY5, PDE2A, and SLC2A1, have recently been linked to PxD phenotypes.7-9 More rarely, PRRT2 mutations have also been associated with neurodevelopmental impairment.8 These observations suggest that a PxD-NDD syndrome may represent an underrecognized clinical entity. It is interesting to note that topiramate can act as an histone deacetylase inhibitor.10 We can speculate that the patient's improvement with this treatment may in part relate to this action. In conclusion, this case history illustrates the early occurrence of movement disorders in H3-3A and H3-3B-related neurodevelopmental disorder; similar observations are increasingly described in many neurodevelopmental disorders, an important consideration because many of them might benefit from targeted treatments. (1) Research project: A. Conception, B. Organization, C. Execution. (2) Manuscript Preparation: A. Writing of the first draft, B. Review and Critique. G.D’.O.: 1A–C, 2A,B. S.P.: 1C, 2B. G.M.: 1C, 2B. I.M.: 1A–C, 2B. We gratefully acknowledge the family for the participation. Ethical Compliance Statement: This study was performed in line with the principles of the Declaration of Helsinki and procedures were in accordance with the ethical standards of our Institution. Written informed consent was obtained from the legal guardian of the patient, for the publication of the case history and the video included in this article, authorizing the offline and/or online distribution of the video material. We confirm that we have read the Journal's position on issues involved in ethical publication and affirm that this work is consistent with those guidelines. Funding Sources and Conflict of Interest: No targeted funding was received for this study. The authors declare that there are no conflicts of interest relevant to this work. Financial Disclosures for the Previous 12 Months: GD'O received epilepsy fellowship support from Savoy Foundation and financial support to attend the American Epilepsy Society Congress 2024 from Paladin. The other authors declare that there are no additional disclosures to report. The data that support the findings of this study are available on request from the corresponding author. The data are not publicly available due to privacy or ethical restrictions.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.008
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.309
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0020.008
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.018
GPT teacher head0.307
Teacher spread0.289 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

Explore more

Same venueMovement Disorders Clinical PracticeSame topicGenetics and Neurodevelopmental DisordersFrench-language works237,207