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Record W4412585007 · doi:10.1016/j.jhin.2025.07.003

Characterization of the environment of patients colonized with carbapenemase-producing organisms: role of air and surfaces in the dissemination of key resistance genes

2025· article· en· W4412585007 on OpenAlexafffundabout
Annabelle Richer-Fortin, Marc Veillette, Florent Rossi, Yves Longtin, Adriana Larrotta, Bianka Paquet-Bolduc, Caroline Duchaine

Bibliographic record

VenueJournal of Hospital Infection · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAntibiotic Resistance in Bacteria
Canadian institutionsUniversité LavalMontreal General HospitalInstitut universitaire de cardiologie et de pneumologie de Québec
FundersInstitut de Recherche Robert-Sauvé en Santé et en Sécurité du TravailInstitut de recherche Robert-Sauve
KeywordsMedicineKey (lock)GeneResistance (ecology)MicrobiologyComputational biologyGeneticsEcologyBiology

Abstract

fetched live from OpenAlex

Background Hospital-acquired infections (HAIs) caused by Carbapenemase-Producing Organisms (CPOs) pose a significant health concern. Healthcare settings implement measures to control CPO spread and prevent outbreaks, but the role of air in disseminating carbapenemase genes remains unclear. This study assesses three genes carbapenemase-associated ( bla KPC , bla OXA-48 , bla NDM ) in the environment of CPO-colonized patients. Methods A prospective observational study was conducted in four hospitals in the province of Quebec, in rooms of CPO-colonized patients. Air was collected actively inside the rooms along with floor and no-touch samples with pre-moistened swabs and sponges, and compared with control room ( i.e. hosting non–CPO colonized patients) located on the same floor. Additional floor samples were collected in adjacent hallways to estimate potential dissemination within the settings. The presence and abundance of carbapenemase-producing genes ( bla KPC , bla NDM and bla OXA-48 ) was evaluated using qPCR. Results Carbapenemase-encoding genes were frequently detected in CPO-colonized patient environments, notably on floors (97% of detection frequency), door frames (52%), and no-touch surfaces (42%). Conversely, only one air sample tested positive for bla KPC . These genes were also detected in adjacent hallways (92%), control rooms (100%), and their hallways (78%), with abundance decreasing with distance from CPO-colonized rooms. Conclusion These findings suggest that carbapenem resistance can spread within healthcare settings and that air may play a role in gene dissemination. Additional measures should be considered to limit resistance gene transfer, particularly via floors and air.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.087
Threshold uncertainty score0.135

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.002
GPT teacher head0.192
Teacher spread0.190 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2025
Admission routes3
Has abstractyes

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