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Record W4412695671 · doi:10.1099/jgv.0.002111

Summary of taxonomy changes ratified by the International Committee on Taxonomy of Viruses (ICTV) from the Bacterial Viruses Subcommittee, 2025

2025· article· en· W4412695671 on OpenAlexaff
Dann Turner, Evelien M. Adriaenssens, Rudolf Amann, Pavol Bárdy, Nina Bartlau, Jakub Barylski, Stanisław Błażejak, Majid Bouzari, Ariane Briegel, Yves Briers, Daniel Carrillo, Xia Chen, Dennis Claessen, Ryan Cook, Marco A. Crisci, Arnaud Dechesne, Paulina Deptula, Bas E. Dutilh, Bert Ely, Lars Fieseler, Paul C. M. Fogg, Akihito Fukudome, Mohammed Saeed Ganjoor, Iwona Gientka, Karin Holmfeldt, Panos G. Kalatzis, Kathryn M. Kauffman, Annabel Kempff, Petar Knežević, Eugene V. Koonin, Andrew M. Kropinski, Mart Krupovìč, D. İpek Kurtböke, Kai S Lambon, Rob Lavigne, Susan M. Lehman, Hui Liu, Cédric Lood, Rudi Lurz, Sari Mäntynen, Cole B. Matrishin, Mathias Middelboe, Andrew Millard, Cristina Moraru, Dennis Sandris Nielsen, Franklin L. Nóbrega, Takuro Nunoura, Hanna M. Oksanen, Véronique Ongenae, Boris Parra, Célia Pas, Joseph Pogliano, Minna M. Poranen, Siravudh Potipimpanon, Amy Prichard, Hannah V. Pye, Daniela Rothschild-Rodriguez, Daniel E. Rozen, Joanne M. Santini, Sha Yu, Dziyana Shymialevich, Barbara Sokołowska, Abbas Soleimani-Delfan, Paulina Średnicka, Paulo Tavares, Andrea Telatin, Igor Tolstoy, Shyun-ichi Urayama, Vera van Neer, Finn K. Vogensen, Qiannan Wen, Antje Wichels, Michał Wójcicki

Bibliographic record

VenueJournal of General Virology · 2025
Typearticle
Languageen
FieldEnvironmental Science
TopicBacteriophages and microbial interactions
Canadian institutionsUniversity of Guelph
FundersBiotechnology and Biological Sciences Research CouncilBiocenter FinlandVlaamse regeringNovo Nordisk FondenSigrid Juséliuksen SäätiöBundesministerium für Bildung und ForschungNovo NordiskNational Institute of Dental and Craniofacial ResearchJane ja Aatos Erkon SäätiöFonds Wetenschappelijk OnderzoekEmil Aaltosen SäätiöVillum FondenHelsingin YliopistoNational Institute of Allergy and Infectious DiseasesMedical Research CouncilAlexander von Humboldt-StiftungDeutsche ForschungsgemeinschaftDirectorate for Biological SciencesNational Institutes of HealthU.S. Department of Health and Human Services
KeywordsTaxonomy (biology)BiologyPhylumTaxonVirus classificationBacterial taxonomyEvolutionary biologyComputational biologyVirologyZoologyEcologyGeneticsBacteriaGenomeGene

Abstract

fetched live from OpenAlex

This article summarises the activities of the International Committee on Taxonomy of Viruses Bacterial Viruses Subcommittee, detailing developments in the classification of bacterial viruses. We provide here an overview of all new, abolished, moved and renamed taxa proposed in 2024, approved by the Executive Committee, and ratified by membership vote in 2025. Through the collective efforts of 74 international contributors of taxonomy proposals in this round, 43 ratified proposals have led to the creation of one new phylum, one class, four orders, 33 families, 14 subfamilies, 194 genera and 995 species. These proposals mark significant progress in refining the taxonomy of bacterial viruses. Key updates include the creation of new orders and families that include existing taxa to better reflect genomic and evolutionary relationships. As sequencing and bioinformatics approaches continue to advance, further expansion and refinements in viral taxonomy can be anticipated in the coming years.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.064
metaresearch head score (Gemma)0.071
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.064
Threshold uncertainty score0.341

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0640.071
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0010.003
Bibliometrics0.0100.008
Science and technology studies0.0060.002
Scholarly communication0.0090.004
Open science0.0050.004
Research integrity0.0060.011
Insufficient payload (model declined to judge)0.0070.005

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.038
GPT teacher head0.262
Teacher spread0.224 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations23
Published2025
Admission routes1
Has abstractyes

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