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Record W4412831973 · doi:10.1101/2025.07.31.668010

Engulfing to Adapt: Efferocytosis by Epithelial Cells Triggers Cell State Transitions During Tissue Remodeling

2025· preprint· en· W4412831973 on OpenAlexaff
Adda-Lee Graham-Paquin, Deepak Saini, Sophie Viala, Mara KM Whitford, Mathieu Tremblay, William A. Pastor, Luke McCaffrey

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2025
Typepreprint
Languageen
FieldImmunology and Microbiology
TopicPhagocytosis and Immune Regulation
Canadian institutionsUniversité de MontréalInstitute for Research in Immunology and CancerMcGill University
Fundersnot available
KeywordsEfferocytosisCell biologyTissue remodelingState (computer science)CellChemistryBiologyComputer scienceInflammationImmunologyBiochemistryMacrophageIn vitro

Abstract

fetched live from OpenAlex

Abstract Hormone deprivation treatments are a leading approach in prostate cancer treatment. Following deprivation, the organ regresses from a fully differentiated secretory organ to one less than 50% of the original size, that has been reprogrammed to a state primed for regeneration. Despite widespread use of hormone treatments, the events linking cellular apoptotic responses following prostate hormone deprivation and cell state reprogramming are not fully understood. We report that the absence of hormones creates a microenvironment rich in apoptotic cells that are engulfed by neighboring prostate epithelial cells. Mechanistically, we found that epithelial cells alter their metabolism and gene expression during efferocytosis. Efferocytic epithelial cells adopt a more glycolytic metabolism, resulting in elevated levels of lactate production. This correlates with increased histone Lactylation over gene regulatory elements for genes regulating autophagy and catabolism. To further demonstrate that efferocytosis is necessary to remodel tissue during regression, we expressed a mutant of the receptor protein MFGE8, MFGE8-D89E to “mask” PtdSer in the prostate epithelium and reduce efferocytosis. This effectively prevented the cell and lumen size changes hormone-deprived prostates usually go through. Our findings suggest new perspectives on how epithelial cell efferocytosis can impact tissue remodeling and altered cellular states.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.207
Teacher spread0.200 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)Same topicPhagocytosis and Immune RegulationFrench-language works237,207