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Record W4413103676 · doi:10.1021/acscentsci.5c00804

An Assessment of Chemical Diversity in Microbial Natural Products

2025· review· en· W4413103676 on OpenAlexafffund
Roger G. Linington

Bibliographic record

VenueACS Central Science · 2025
Typereview
Languageen
FieldMedicine
TopicMicrobial Natural Products and Biosynthesis
Canadian institutionsSimon Fraser University
FundersNational Center for Complementary and Integrative HealthNatural Sciences and Engineering Research Council of CanadaNational Institutes of HealthOffice of Dietary Supplements
KeywordsNatural (archaeology)Diversity (politics)Biochemical engineeringData scienceComputer scienceComputational biologyBiologyEngineering

Abstract

fetched live from OpenAlex

Natural products continue to play important roles in biomedical, agricultural and ecological science. Yet despite ongoing advances in "omics" technologies, including genomics, transcriptomics, phenomics and metabolomics, there is still no clear consensus on the scope and scale of chemical diversity in the natural world. The evolution and maturation of chemical databases for natural products offer opportunities to explore this question from a range of different perspectives. This Outlook will use data from the Natural Products Atlas to examine rates of similarity and variation among biosynthetic classes of molecules, to explore how structure can be related to function, and to examine the scope and scale of new scaffold discovery in the current era of natural products science. It presents an examination of known chemical diversity, investigates what this diversity can tell us about potential translational applications, and explores how current knowledge informs what we might expect to discover in future studies.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Other design · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.774
Threshold uncertainty score0.745

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.002
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.028
GPT teacher head0.350
Teacher spread0.322 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designOther design
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations5
Published2025
Admission routes2
Has abstractyes

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