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Record W4413374925 · doi:10.3897/phytokeys.261.151948

Reinstatement of Hellwigia Warb. (Zingiberaceae) and its molecular and morphological delimitation

2025· article· en· W4413374925 on OpenAlexafffund
Seni Kurnia Senjaya, Axel Dalberg Poulsen, Quentin Cronk

Bibliographic record

VenuePhytoKeys · 2025
Typearticle
Languageen
FieldPharmacology, Toxicology and Pharmaceutics
TopicGinger and Zingiberaceae research
Canadian institutionsUniversity of British Columbia
FundersNatural Sciences and Engineering Research Council of CanadaLembaga Pengelola Dana PendidikanTorben og Alice Frimodts FondCarlsbergfondetFairchild Tropical Botanic GardenCompute Canada
KeywordsCladeBiologyMonophylyNdhFPolyphylyGenusTaxonLineage (genetic)ZoologyInternal transcribed spacerEvolutionary biologyBotanyPhylogenetic tree

Abstract

fetched live from OpenAlex

The currently polyphyletic genus Alpinia Roxb. (Zingiberaceae) has over 260 species widely spread through subtropical and tropical Asia and a complex taxonomic history. This study focuses on the “Carolinensis” clade of Alpinia hitherto suggested by molecular evidence. We expand on previous research through more comprehensive taxon sampling (about a fivefold increase) and morphological observation. We inferred maximum likelihood (ML) and Bayesian trees based on the nuclear ribosomal internal transcribed spacer (ITS) region, using sequences available on GenBank along with 70 newly generated sequences from this study. Our main findings are as follows: (1) ITS provides a convenient marker for separating members of this clade from other Alpinieae . (2) Phylogenetic reconstruction strongly supports the monophyly of the Carolinensis clade. (3) We identify four subclades with relatively distinct geographical distributions. (4) We determine that morphologically the clade is characterized by inflorescences having densely packed flowers arranged on lateral monochasial cymes, tubular bracteoles, and flowers with oblong or linear labella. (5) The clade is apparently restricted to the east of Huxley’s biogeographic line. These findings support the recognition of the Carolinensis clade as a distinct genus. Hellwigia Warb. is the oldest valid name for this lineage, and till the present paper only includes H. pulchra Warb. We present a generic circumscription of the genus comprising 76 species to date placed in Alpinia . In the present paper, we make 76 new combinations and designate 26 lectotypes. The eastern distribution of the clade offers insights into historical biogeographic barriers and lineage diversification. As such, Hellwigia represents an interesting model for exploring evolutionary and ecological processes in this region, and future phylogenomic studies will be critical for resolving remaining phylogenetic uncertainties and for deepening our understanding of the evolutionary dynamics in this unique lineage.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.112
GPT teacher head0.471
Teacher spread0.359 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2025
Admission routes2
Has abstractyes

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