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Record W4413405693 · doi:10.1111/tpj.70411

The down‐regulation of <i>MsWOX13‐2</i> promotes enhanced waterlogging resilience in alfalfa

2025· article· en· W4413405693 on OpenAlexafffund
Udaya Subedi, Kimberley Burton Hughes, Madeline Lehmann, Guanqun Chen, S. N. Acharya, Abdelali Hannoufa, Cuong Nguyen, Stacy D. Singer

Bibliographic record

VenueThe Plant Journal · 2025
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant responses to water stress
Canadian institutionsAgriculture and Agri-Food CanadaUniversity of AlbertaUniversity of Lethbridge
FundersAgriculture and Agri-Food CanadaBeef Cattle Research CouncilAlberta MilkGovernment of CanadaAlberta Beef ProducersResults Driven Agriculture Research
KeywordsBiologyWaterlogging (archaeology)Abiotic componentRNA interferencePhotosynthesisGene knockdownBotanyGeneRNAGeneticsEcology

Abstract

fetched live from OpenAlex

SUMMARY Soil waterlogging events are predicted to escalate globally as a result of climate change, threatening the sustainability of alfalfa ( Medicago sativa L.) and livestock production in the future. WUSCHEL‐related homeobox (WOX) transcription factors are known to play a role in numerous developmental processes and abiotic stress responses; however, their function in waterlogging resilience has not been investigated as of yet. In the present study, we functionally characterized the alfalfa MsWOX13‐2 gene, which we found to be differentially expressed in response to waterlogging. Although the RNAi‐mediated silencing of MsWOX13‐2 in alfalfa did not affect growth or morphology under normally watered conditions, MsWOX13‐2 RNAi plants exhibited higher chlorophyll retention and maximum quantum efficiency of photosystem II, as well as greater survivability, compared to empty vector genotypes under waterlogging. Subsequent analyses indicated that MsWOX13‐2 RNAi leaves accumulated less H 2 O 2 and displayed a greater increase in superoxide dismutase activity under waterlogging, resulting in reduced oxidative damage, which may have contributed to the enhanced waterlogging tolerance in these genotypes. RNA‐Seq analysis confirmed alterations in the transcript levels of genes related to antioxidants, as well as those involved in photosynthesis, anaerobic fermentation, phytohormone‐related pathways, and transcriptional regulation in the leaves of WOX13‐2 RNAi genotypes compared to wild type following waterlogging stress. Bi‐allelic mutation of MsWOX13‐2 in alfalfa using CRISPR/Cas9 confirmed its function in waterlogging response. Overall, our findings suggest that MsWOX13‐2 acts as a negative regulator of waterlogging response in alfalfa, providing a novel candidate for downstream breeding endeavors in this important species.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.206
Teacher spread0.196 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2025
Admission routes2
Has abstractyes

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