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Record W4413902654 · doi:10.1002/fsn3.70875

Investigating the Chemical–Biological Link in <i>Ziziphora galinae</i> Extracts for the Discovery of Novel Raw Materials via <i>In Silico</i> and In Vitro Assays

2025· article· en· W4413902654 on OpenAlexaff
Serdar Korpayev, Mehmet Veysi Çetiz, Jasmina Glamočlija, Neda Aničić, Uroš Gašić, Dejan Stojković, Mirap Agamuradov, Hemra Hamrayev, Stefano Dall’Acqua, Gökhan Zengin

Bibliographic record

VenueFood Science & Nutrition · 2025
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicEssential Oils and Antimicrobial Activity
Canadian institutionsUniversity of Calgary
FundersMinistry of EducationMinistry of Health
KeywordsIn silicoChemistryRutinBinding affinitiesCytotoxicityIn vitroEnzymeCaffeic acidIC50AntifungalAsteraceaeBiochemistryAntioxidantBiologyBotanyMicrobiology

Abstract

fetched live from OpenAlex

ABSTRACT This study examined the impact of the extraction methods (70% ethanolic extraction, infusion) on the overall biological profile and concentration of phenolic compounds of Ziziphora galinae (ZG) . Infusion yielded significantly higher phenolics and flavonoids (75.73 ± 0.22 mg GAE/g and 8.87 ± 0.36 mg RE/g) than the ethanol extract (10.44 ± 0.1 and 2.44 ± 0.17, respectively). Nineteen key bioactive compounds, including caffeoylquinic acids, rutin, and p‐coumaric acid, were identified. Both extracts exhibited strong antibacterial and moderate antifungal activity, but no notable cytotoxicity (IC50 > 400 μg/mL). Furthermore, in silico analyses involving molecular docking, molecular dynamics (MD) simulations, and MM‐PBSA free energy calculations revealed that the phytochemicals identified from ZG exhibited strong binding affinities and high structural stability against key human metabolic enzymes and essential bacterial proteins involved in cell wall biosynthesis and DNA replication. Based on these results, the varying effects produced by the two extracts of endemic ZG may be attributed to the presence of distinct compounds, making them a valuable source of bioactive compounds to benefit human health.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.027
GPT teacher head0.247
Teacher spread0.220 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

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