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Record W4414024234 · doi:10.1101/2025.09.02.673885

Isolation-free Identification and Phenotyping of First-Trimester Extravillous Trophoblasts Residing in Cervical Fluid

2025· preprint· en· W4414024234 on OpenAlexaff
Manpreet Kalkat, Kevin D. Pavelko, Michael Strausbach, Austin Goodyke, Lauren C. Crimp, Dennis K. Lee, D. Randall Armant, Sascha Drewlo

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2025
Typepreprint
Languageen
FieldMedicine
TopicPregnancy and preeclampsia studies
Canadian institutionsUniversity of TorontoHealth Sciences CentreSunnybrook Health Science Centre
Fundersnot available
KeywordsIsolation (microbiology)Identification (biology)First trimesterPregnancySecond trimesterMedicineBiologyObstetricsBioinformaticsFetusGenetics

Abstract

fetched live from OpenAlex

Abstract Preeclampsia (PE) remains difficult to predict, particularly when it manifests late in gestation. To capture early placental signals, we profiled trophoblast cells sampled from the cervix in the first trimester using mass cytometry (CyTOF). We established protocols for clinical sample storage and applied spike-in reference control cells to deliver reproducible, batch-corrected protein measurements, thereby advancing CyTOF from a discovery tool to a translational platform. Within HLA-G⁺CD45⁻ cells, we identified canonical CK7⁺ extravillous trophoblasts, as well as a previously unrecognized CK7⁻subset, and both subsets expressed placental proteins. Expression of PAPP-A, GAL-13, and GAL-14 was significantly altered in a pilot cohort of pregnancies that subsequently developed late-onset PE, distinguishing cases from controls at both single-marker and multivariate levels. These findings reveal unexpected trophoblast heterogeneity, demonstrate that placental alterations are detectable before the development of late-onset PE, and establish cervical trophoblast profiling as a promising platform for scalable biomarker discovery and first-trimester risk assessment in placenta-mediated disorders. Impact Statement First-trimester trophoblasts sampled from the cervix reveal early molecular changes associated with late-onset preeclampsia, while an isolation-free, reference-normalized CyTOF workflow establishes a scalable, clinically compatible platform for biomarker discovery and multicenter-ready early risk assessment in pregnancy.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.001
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.239
Teacher spread0.224 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

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