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Record W4414126122 · doi:10.17221/6/2025-pps

Characterisation of strawberry mild yellow edge virus isolates detected for the first time in Poland

2025· article· en· W4414126122 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

aboutThe title or abstract carries a Canadian signal from the geographic lexicon.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenuePlant Protection Science · 2025
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Virus Research Studies
Canadian institutionsnot available
Fundersnot available
KeywordsPhylogenetic treeRecombinationStrain (injury)Coat proteinVirusSequence analysisPlant virusGenePhylogenetics

Abstract

fetched live from OpenAlex

Strawberry mild yellow edge virus (SMYEV) was detected in 116 samples out of 423 collected from strawberry plants grown in commercial and experimental plantations in seven provinces of Poland. The number of samples infected with strawberry mottle virus (SMoV) accounted for 84.6% of the 26 SMYEV-positive samples selected for sequence analysis. The nucleotide sequence similarity of the coat protein (CP) gene of 26 selected SMYEV isolates ranged from 84.8% to 100%, and 81.4–99.5% identity was found between these isolates and 48 SMYEV strains from different countries. The CP region's phylogenetic analysis showed that most isolates from Poland clustered within group I (type D74). In contrast, Talis and 3233CL isolates represented group III (type MY18), and the San isolate was clustered in group V (type ABY1-01). Recombination analysis of the CP gene sequences detected two possible recombination events. One was noticed in the Argentinian strain 53, which formed group III with isolates from Chile, and Polish isolates Talis and 3233CL. Another was identified in the Chinese strain sy02 sequence with evidence of the same recombination event in Canadian strains, and the Polish isolate San (V group). Leaf epinasty, mottling, and yellowing of the young leaves and dieback of the older leaves were observed on 'Alpine' and 'EMC' indicator plants grafted with leaves of strawberry plants co-infected with SMYEV and SMoV. A single infection with SMYEV induced milder symptoms based on these indicators.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.588
Threshold uncertainty score0.386

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.041
GPT teacher head0.263
Teacher spread0.222 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it