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Record W4414422700 · doi:10.1093/plphys/kiaf405

Importance of measuring and reporting environmental conditions across plant science subdisciplines

2025· article· en· W4414422700 on OpenAlexaff
Christopher Vincent, Courtney P. Leisner, Anna M. Locke, Elena A. Pelech, Stephanie C. Schmiege, Thomas D. Sharkey, Mauricio Tejera‐Nieves, Dorcas Olufunke Alade, Amanda Á. Cardoso, Amy Cho, Kithmee K. de Silva, Nicole Dziedzic, Alison R. Gill, Rajvir Kaur, Sarah L Lane, Gillian Zeng Michalczyk, Atinder Singh, Demissew Tesfaye Teshome

Bibliographic record

VenuePLANT PHYSIOLOGY · 2025
Typearticle
Languageen
FieldEnvironmental Science
TopicSpecies Distribution and Climate Change
Canadian institutionsUniversity of the Fraser Valley
Fundersnot available
KeywordsInterpretabilityFocus (optics)Interpretation (philosophy)Replication (statistics)Plant scienceEnvironmental researchEnvironmental changeAdaptation (eye)

Abstract

fetched live from OpenAlex

Understanding plant responses to the environment is based on research performed across several scales and subdisciplines. However, the interpretation and repeatability of experimental results depend on careful reporting of experimental procedures and environmental conditions. These conditions include light intensity and quality, temperature, relative humidity and vapor pressure deficit, soil water potential or volumetric water content, and pot size, which interact on plant physiological responses across biological and experimental scales regardless of whether they are the focus of the experiment. To ascertain how effectively and consistently these conditions are reported, we reviewed more than 200 plant science research articles on vascular plants published from 2020 through 2024. Environmental condition data were often not reported, including cases where the specific environmental variable was the focus of the study. This situation hampers both replicability and interpretability of results and hinders progress in understanding plant physiological responses across subdisciplines. The Environmental and Ecological Plant Physiology section of the American Society of Plant Biologists recommends several best practices to measure and report environmental conditions in plant physiology experiments, such as measuring and reporting actual environmental conditions, especially of control variables, to enable replication and comparative interpretation among experiments. These guidelines can aid authors in experimental design and manuscript preparation and assist reviewers in evaluating submitted manuscripts. Following such guidelines will enhance the dynamic progress of sound plant science within our community by improving replicability and enabling cross-disciplinary interpretation of results.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.542
metaresearch head score (Gemma)0.692
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesMetaresearch
DomainCandidate signal: Reporting · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.458
Threshold uncertainty score0.565

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.5420.692
Meta-epidemiology (narrow)0.0020.002
Meta-epidemiology (broad)0.0050.003
Bibliometrics0.0200.023
Science and technology studies0.0040.009
Scholarly communication0.0160.022
Open science0.0080.011
Research integrity0.0050.009
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.045
GPT teacher head0.297
Teacher spread0.252 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; the direct Gemma label and the distilled Codex classifier agree on what is shown here.

Study designNot applicable
DomainReporting
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2025
Admission routes1
Has abstractyes

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Same venuePLANT PHYSIOLOGYSame topicSpecies Distribution and Climate ChangeFrench-language works237,207