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Record W4414531848 · doi:10.1093/jxb/eraf414

Molecular architecture of developing xylem in Norway spruce reveals spatial and temporal patterns of cell wall polymer deposition

2025· article· en· W4414531848 on OpenAlexaff
Olga Blokhina, Yaseen Mottiar, Notburga Gierlinger, Catherine Tétard‐Jones, William G. T. Willats, Kurt Fagerstedt, Anna Kärkönen

Bibliographic record

VenueJournal of Experimental Botany · 2025
Typearticle
Languageen
FieldEngineering
TopicLignin and Wood Chemistry
Canadian institutionsUniversity of Ottawa
FundersNovo Nordisk FondenNovo NordiskAcademy of Finland
KeywordsCell wallLigninXylemSecondary cell wallFerulic acidDeposition (geology)CelluloseRaman microspectroscopy

Abstract

fetched live from OpenAlex

Using microarray polymer profiling (MAPP), immunocytochemical staining, and Raman spectroscopy, we conducted a detailed spatiotemporal survey of the deposition of cell wall components during xylem differentiation in Norway spruce. These insights are essential for understanding the intricate architecture of wood cell walls during the initial stages of development immediately following cambial divisions. MAPP was used to obtain an overview of cell wall polysaccharides, glycoproteins, and ferulic acid residues in developing xylem. The most interesting findings were investigated in further detail using immunomicroscopy and Raman spectroscopy. In axial tracheids, deposition of pectic compounds and cellulose only slightly preceded the first deposition of lignin. Lignification was initiated in the middle lamellae and cell wall corners and proceeded during the development of the S1 layer and intensified later during cell wall thickening. Raman analysis revealed an earlier deposition of lignin than shown previously, which coincided with the deposition of methylesterified or partially methylesterified homogalacturonan initially in the radial cell walls and later in the tangential cell walls of developing earlywood. Minimal binding of an antibody against feruloylated compounds indicated that ferulic acid residues do not participate in the initiation of lignification in Norway spruce.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.414

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.004
GPT teacher head0.219
Teacher spread0.215 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

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