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Record W4414532937 · doi:10.1139/gen-2025-0014

Chromosomal evolution and evidence of a putative multiple sex chromosome system in the Amazonian northeastern pepper frog (<i>Leptodactylus vastus</i>, Lutz 1930)

2025· article· en· W4414532937 on OpenAlexvenueno aff
David Santos da Silva, Rodrigo Petry Corrêa de Sousa, Wallax Augusto Silva Ferreira, Anderson José Baía Gomes, Edivaldo Herculano Corrêa de Oliveira

Bibliographic record

VenueGenome · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities
Canadian institutionsnot available
FundersConselho Nacional de Desenvolvimento Científico e Tecnológico
KeywordsHeterochromatinKaryotypeChromosomeLineage (genetic)Phylogenetic treeMeiosisChromosomal polymorphismConstitutive heterochromatinPhylogenetics

Abstract

fetched live from OpenAlex

The genus Leptodactylus is among the most studied anurans in cytogenetics. Despite exhibiting chromosomal conservatism with 2n = 22, microstructural studies (here defined as investigations of subchromosomal features such as DNA repetitive elements, chromatin organization, and sequence-level structural arrangements) have revealed significant karyotypic diversity within the genus, primarily associated with the distribution of repetitive sequences. Additionally, complex sex chromosome systems have been identified, underscoring the importance of further studies on these species. In this context, we performed a karyotypic characterization of Leptodactylus vastus from the Amazonian region. Using conventional cytogenetics, FISH with repetitive sequences, and phylogenetic analyses, we identified extensive chromosomal rearrangements, evidenced by the distribution of heterochromatin and repetitive sequences, including microsatellites, 18S rDNA, and U2 snDNA. Meiotic analyses in males revealed the presence of multivalent chromosomal chains involving eight chromosomes, a pattern consistent with a multiple sex chromosome system (X1Y1X2Y2X3Y3X4Y4). Concerning the clusters of repetitive sequences, we observed in specific chromosome pairs underscores the potential cytotaxonomic relevance of these markers. Phylogenetically, Leptodactylus vastus belongs to the Leptodactylus pentadactylus group, which includes other species known to possess multiple sex chromosome systems, although the absence of female data prevents definitive confirmation of this system in this species. Our results suggest that chromosomal rearrangements may have contributed to the genomic diversification of the species, supporting previous hypotheses on the role of structural variation in Leptodactylus species while highlighting the need for further comparative studies involving both sexes to fully clarify the nature of the multivalent chromosomal chains observed in Leptodactylus vastus.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.253
Teacher spread0.242 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

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