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Record W4414615571 · doi:10.46756/001c.143984

PATH-SAFE Consortium Recommendations for Genomic Surveillance of Food-Borne Diseases Escherichia Coli and Listeria Monocytogenes

2025· article· en· W4414615571 on OpenAlexaff
David L. Gally, Martin Maiden, Keith A. Jolley, K. Marie McIntyre, Sascha Ott, Alistair C. Darby, Robert A. Kingsley, Antonia Chalka, Kathryn E. Holt, Alan McNally, Kate S. Baker, Matthew B. Avison, Manal AbuOun, David W. Graham, Claire Jenkins, Marie Anne Chattaway, Satheesh Nair, Adriana Vallejo‐Trujillo, Jason King, Edward Haynes, Richard J. Ellis, Jacqui McElhiney, Daniel Dorey-Robinson, Matthew W. Gilmour, Anaïs Painset, Adrian Egli, Aleisha Reimer, Alison E. Mather, Marc W. Allard, Eric Stevens, Koji Yahara, Philippe Lehours, Torsten Seemann, René S. Hendriksen, Frank M. Aarestrup, David Aanensen, Richard Acton, Nabil-Fareed Alikhan, Angela Blanton, James R. Baker, Jude Walker, Georgina Lewis-Woodhouse, Corin Yeats, Khalil Abudahab, Carolin Vegvari

Bibliographic record

VenueFSA research and evidence. · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicListeria monocytogenes in Food Safety
Canadian institutionsPublic Health Agency of Canada
Fundersnot available
KeywordsListeria monocytogenesEscherichia coliMultilocus sequence typingSerotypeWhole genome sequencingGenomeMetadataWorkflow

Abstract

fetched live from OpenAlex

sequence data showed that isolates of the outbreak cluster were resistant to Benzalkonium (emrC gene) and quaternary ammonium compounds (qacC gene).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.417
Threshold uncertainty score0.559

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.170
GPT teacher head0.415
Teacher spread0.245 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

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