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Record W4414617659 · doi:10.1016/j.soilbio.2025.109993

Microbial mechanisms underlying differences of methane emissions between urban and rural wetlands

2025· article· en· W4414617659 on OpenAlexaff
Yu-Wen Lin, Xinyu Yi, Ning Chen, Yongping Li, Yinghe Peng, Shuguang Liu, Changhui Peng, Xiaoyong Chen, Shuailong Feng, Pengpeng Duan, Yan Liu, Juyang Liao

Bibliographic record

VenueSoil Biology and Biochemistry · 2025
Typearticle
Languageen
FieldEnvironmental Science
TopicPeatlands and Wetlands Ecology
Canadian institutionsUniversité de MontréalUniversité du Québec à Montréal
FundersNatural Science Foundation of Hunan ProvinceNational Natural Science Foundation of China
KeywordsWetlandMethanogenMethanotrophMethanogenesisMethaneEcosystemMicrobial population biologyConstructed wetlandFlux (metallurgy)

Abstract

fetched live from OpenAlex

ABSTRACT Methane (CH 4 ) emissions differ between urban and rural wetlands, while the microbial mechanisms associated with these differences have not been clearly identified. Here, we characterized the CH 4 -cycling microbial communities and their functional function metabolic pathways between urban and rural wetlands by using 16S rRNA amplicon sequencing, metagenomes and CH 4 flux measurements. Results showed that rural wetlands primarily utilized acetate/CO 2 -dependent methanogenic pathway and complete carbon oxidation to CO 2 in methanotrophic pathway. Whereas, urban wetlands were dominated by the coenzyme M-dependent methanogenic pathway and trimethylamine catabolism, with methanotrophic pathway characterized by enhanced carbon assimilation capacity. In wetland water, while the abundances of methanogens in urban water were 5-fold lower than in rural water, urban water exhibited stronger microbial cooperation and higher metabolic flexibility, which were associated with an 85% higher water-atmosphere CH 4 flux compared to rural counterparts. In wetland soil, key environmental factors (e.g. higher pH and lower organic matter content compared to rural sites) shaped distinct microbial community structures and CH 4 metabolic traits. These differences were shown as higher functional gene diversity, more stable co-occurrence networks, and greater metabolic flexibility, which were linked to a 6-fold higher soil CH 4 emissions than in rural soil. This study describes the microbial mechanisms underlying CH 4 emission differences between urban and rural wetlands, providing insights into microbially mediated CH 4 cycling in urban wetland ecosystems.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.254
Teacher spread0.243 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2025
Admission routes1
Has abstractno

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