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Record W4414850778 · doi:10.1038/s41467-025-63948-4

Neutralizing and binding antibodies are a correlate of risk of COVID-19 in the CoVPN 3008 study in people with HIV

2025· article· en· W4414850778 on OpenAlexaff
Nonhlanhla N. Mkhize, Bo Zhang, Caroline Brackett, Peter Elyanu, Asa Tapley, Sufia Dadabhai, Jiani Hu, Trần Ngọc Bích, Daniel J. Schuster, Jack Heptinstall, Sheetal Sawant, Kelly E. Seaton, Marcella Sarzotti‐Kelsoe, Aaron Hudson, Yutong Jin, Sinethemba Bhebhe, Haajira Kaldine, Prudence Kgagudi, Tandile Modise, Nyaradzo Mgodi, Jessica Andriesen, April K. Randhawa, Leigh H. Fisher, Jia Jin Kee, Craig A. Magaret, James Peng, Avi Kenny, Lindsay N. Carpp, Siyu Heng, Manuel Villarán, Azwidihwi Takalani, Bert Le Roux, Eduan Wilkinson, Jackline Odhiambo, Parth D. Shah, Laura Polakowski, Margaret Yacovone, Taraz Samandari, Zvavahera M. Chirenje, Joseph Makhema, Ethel Kamuti, Katanekwa Njekwa, Harriet Nuwagaba‐Biribonwoha, Sharlaa Badal‐Faesen, William Brumskine, Soritha Coetzer, Rodney Dawson, Sinead Delany‐Moretlwe, Andreas H. Diacon, Samantha Fry, Katherine Gill, Anda Madikida, Zaheer Hoosain, Mina C. Hosseinipour, Mubiana Inambao, Craig Innes, Steve Innes, Dishiki Kalonji, Humphrey Mwape, Priya Kassim, Melvin C. Kamanga, William Kilembe, Fatima Laher, Mookho Malahleha, Vongane Louisa Maluleke, Grace Mboya, Philister Adhiambo Madiega, Kirsten McHarry, Essack Mitha, Yajna Duki, Pamela Mda, Moroesi Moerane, Tumelo Moloantoa, Simpson Nuwamanya, Sharana Mahomed, Vimla Naicker, Anusha Nana, Annet Nanvubya, Barbarah Kawoozo, Maphoshane Nchabeleng, Walter Otieno, Elsje Louise Potgieter, Disebo Potloane, Zelda Punt, Jamil Said, Yashna Singh, Sheetal Kassim, Dorothie van der Vendt, Mohammed Siddique Tayob, Yacoob Vahed, Deo Wabwire, James G. Kublin, Linda‐Gail Bekker, Lawrence Corey, Glenda Gray, Yunda Huang, Philip Kotze, Nigel Garrett, John Hural, Guido Ferrari, Erica Andersen‐Nissen, David C. Montefiori, Penny L. Moore, M. Juliana McElrath, Georgia D. Tomaras, Peter B. Gilbert

Bibliographic record

VenueNature Communications · 2025
Typearticle
Languageen
FieldMedicine
TopicSARS-CoV-2 and COVID-19 Research
Canadian institutionsNexus Clinical Research (Canada)
FundersDivision of Microbiology and Infectious Diseases, National Institute of Allergy and Infectious DiseasesOffice of Research Infrastructure Programs, National Institutes of HealthNational Institute of Allergy and Infectious DiseasesU.S. Department of Health and Human ServicesNational Institutes of HealthModernaFred Hutchinson Cancer Research Center
KeywordsAntibodyTiterIncidence (geometry)VaccinationImmune systemAntibody titerHuman immunodeficiency virus (HIV)Neutralizing antibody

Abstract

fetched live from OpenAlex

People with HIV (PWH) are understudied in COVID-19 vaccine trials, leaving knowledge gaps on whether the identified immune correlates of protection also hold in PWH. CoVPN 3008 (NCT05168813) enrolled predominantly PWH and reported lower COVID-19 incidence for a Hybrid vs. Vaccine Group (baseline SARS-CoV-2-positive and one mRNA-1273 dose vs. negative and two doses). Using case-cohort sampling, antibody markers at enrolment (M0) and four weeks post-final vaccination (Peak) are assessed as immune correlates of COVID-19. For the Hybrid Group [n = 287 (195 PWH)], all M0 markers inversely correlate with COVID-19 through 230 days post-Peak, with 50% inhibitory dilution BA.4/5 neutralizing antibody titer (nAb-ID50 BA.4/5) the strongest and only independent correlate (HR per 10-fold increase=0.46, 95% CI 0.28, 0.75; P = 0.002). For the Vaccine Group [n = 115 (86 PWH)], Peak nAb-ID50 BA.4/5 correlates with reduced COVID-19 risk (1.9%, 1.1%, and 0.3% at titers 10, 100, and 1000 AU/ml) through 92, but not 165, days post-Peak. Using multivariable Cox analysis of binding and nAb, nAb titers predict COVID-19 in PWH. Two doses of a 100-µg Ancestral strain mRNA vaccine in baseline-SARS-CoV-2-negative individuals elicit sufficient cross-reacting Omicron antibodies to reduce COVID-19 incidence for 90 days post-Peak, but viral evolution and waning antibodies abrogate this protection thereafter.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.043
GPT teacher head0.399
Teacher spread0.355 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2025
Admission routes1
Has abstractyes

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