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Record W4415236624 · doi:10.1101/2025.10.15.682686

ATG7 vs. ATG5: Distinct Autophagy Pathways Shaping TGF-β Signaling and Endothelial Function

2025· preprint· en· W4415236624 on OpenAlexafffund
Aman Preet Singh, Bharatsinai Peddi, Kriti Bhatt, Hien C. Nguyen, Krishna K. Singh

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2025
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicEpigenetics and DNA Methylation
Canadian institutionsWestern University
FundersCanadian Institutes of Health Research
KeywordsAutophagyATG5Gene knockdownSignallingGene silencingEffectorEndothelial stem cellHedgehog signaling pathway

Abstract

fetched live from OpenAlex

Abstract Autophagy and transforming growth factor-beta (TGF-β) signalling are critical cellular processes that maintain homeostasis and regulate various physiological functions, including endothelial cell function. This study explores the distinct roles of two essential autophagy regulators, autophagy-related gene 5 (ATG5) and ATG7, in modulating TGF-β signalling and endothelial function. To this end, ATG5 and ATG7 were selectively silenced in endothelial cells, with knockdown efficiency confirmed via RT-qPCR and Western blot analyses. Gene expression profiling revealed differential regulation of TGF-β signalling components following ATG5 or ATG7 silencing. Functional assays demonstrated that ATG5 knockdown enhanced endothelial cell proliferation and migration, whereas ATG7 silencing produced distinct, less pronounced effects. Furthermore, downstream effectors of the TGF-β pathway exhibited gene-specific modulation, underscoring divergent roles of ATG5 and ATG7 in this signalling cascade. Collectively, these findings highlight the non-redundant functions of ATG5 and ATG7 in coordinating TGF-β signalling pathways, offering new insights into their contribution to endothelial physiology and potential as therapeutic targets in vascular pathologies.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.224
Teacher spread0.207 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes2
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)→Same topicEpigenetics and DNA Methylation→French-language works237,207→