MétaCan
Menu
← Back to cohort
Record W4415306500 · doi:10.1101/2025.10.15.25338083

Automated Cell-free Protein Synthesis for Distributed Biomanufacturing

2025· preprint· W4415306500 on OpenAlexafffund
Severino Jefferson Ribeiro da Silva, Mohammad Simchi, Quinn Matthews, Pouriya Bayat, Justin R. J. Vigar, Serena Singh, Idorenyin A. Iwe, Bárbara Nazly Rodrigues Santos, David Duplat, Paulina Bolívar, Krištof Bozovičar, Ryan Fobel, Aidan Tinafar, Seray Cicek, Yuxiu Guo, Fahim Masum, Lauren A. Cranmer, Masoud Norouzi, Renata Pessôa Germano Mendes, Cielo León, Laís Ceschini Machado, Wentao Wu, Soheil Talebi, Alexander Klenov, Ashyad Rayhan, Jurandy Júnior Ferraz de Magalhães, Carlos F. Narváez, Moiz A. Charania, Marcelo Henrique Santos Paiva, Gabriel Luz Wallau, Tony Mazzulli, David Sinton, Adriana Bernal, Camila González, Lindomar Pena, Keith Pardee

Bibliographic record

VenuemedRxiv · 2025
Typepreprint
Language
FieldMedicine
TopicMonoclonal and Polyclonal Antibodies Research
Canadian institutionsSinai Health SystemEmmanuel Bible CollegeUniversity of Toronto
FundersCanadian Institutes of Health ResearchUniversity of TorontoInternational Development Research CentreCanada First Research Excellence FundPfizer
KeywordsBiomanufacturingSynthetic biologyCell-free protein synthesisCloning (programming)Production (economics)Fusion protein

Abstract

fetched live from OpenAlex

ABSTRACT Recombinant proteins are fundamental to modern medicine, enabling research, diagnostics, and drug discovery, yet their access is often restricted by centralized manufacturing and cold-chain distribution. Decentralized, on-site biomanufacturing can enable research, provide resilience, and advance personalized medicine. Here, we introduce MANGO (MANufacturing on the GO), a purpose-built, open-source device designed for automated, benchtop cell-free protein synthesis and purification. Computer-controlled synthesis and purification are mediated through biomedical-grade pumps, valves, and a microchannel manifold, enabling rapid protein production directly at the point-of-use. To demonstrate MANGO’s utility, we produced and validated a diverse range of proteins, including nanobodies against SARS-CoV-2 and TNF, cloning enzymes, and diagnostic enzymes, with performance equivalent to their commercial counterparts. We further deployed MANGO in Brazil and Colombia to support patient trials for SARS-CoV-2 and dengue virus diagnostics. These results establish MANGO as a low-cost, portable platform that can democratize access to bioreagents in both high- and low-resource settings and, ultimately, expand participation in the bioeconomy.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.031
GPT teacher head0.318
Teacher spread0.286 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes2
Has abstractyes

Explore more

Same venuemedRxiv→Same topicMonoclonal and Polyclonal Antibodies Research→French-language works237,207→