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Record W4415378460 · doi:10.1021/acs.jcim.5c01784

Unraveling the Disruptive Mechanism of Local Anesthetics on Raft-Like Ordered Membranes: Simulation Studies

2025· article· en· W4415378460 on OpenAlexfundno aff
Sirin Sittiwanichai, Kodai Kanemaru, Masanao Kinoshita, Nobuaki Matsumori, Norio Yoshida

Bibliographic record

VenueJournal of Chemical Information and Modeling · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicLipid Membrane Structure and Behavior
Canadian institutionsnot available
FundersJapan Science and Technology AgencyJapan Society for the Promotion of ScienceNational Research Council CanadaToyota Physical and Chemical Research InstituteMinistry of Education, Culture, Sports, Science and Technology
KeywordsSteric effectsUmbrella samplingMembranePotential of mean forceTetracaineAmphiphileMolecular dynamicsVesicle

Abstract

fetched live from OpenAlex

The membrane perturbation of local anesthetics (LAs) with distinct steric differences─dibucaine (Dib), tetracaine (Tet), and lidocaine (Lid)─as well as their behavior in different regions of the raft-like ordered (Lo) membrane, were investigated using umbrella sampling molecular dynamics (MD) simulations. Both uncharged (-u) and protonated (-p) forms were considered. Our findings from potential mean force (PMF), z -axis diffusion, and area per lipid (APL) confirmed that Dib-u preferentially located at the hydrophobic core, whereas Lid-u shows no specific localization preference and exhibits rapid diffusion across the Lo membrane. The steric effect drives the distinct translocation behavior of LAs-u but has no significant impact on LAs-p. These two factors─bulky properties and high affinity for the hydrophobic core, as observed in Dib-u─contribute to the membrane disruption. This observation is evidenced by the significantly lower PMF profile at the deep hydrophobic core, the greatest lipid packing disorder, and high steric bulk, which is in reasonable agreement with experimental observations. Three-dimensional reference interaction-site model (3D-RISM) analysis further supports the amphiphilic nature of LAs-u and an increase in hydrophilicity of LAs-p. This difference is a key factor modulating the action of LAs-u and LAs-p forms in different membrane environments. Our findings on the distinct behavior governing the Lo membrane translocation of LAs-u are influenced by preferred localization within the Lo membrane and the steric effect. These insights offer valuable insights for the anesthetic design and membrane-based biosensor development.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.218
Threshold uncertainty score0.225

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.021
GPT teacher head0.308
Teacher spread0.287 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

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