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Record W4415513577 · doi:10.5376/tgg.2025.16.0015

Spatiotemporal Transcriptome Atlas of Wheat Grain Filling Stage

2025· article· W4415513577 on OpenAlexvenueno aff
X. T. Feng

Bibliographic record

VenueTriticeae Genomics and Genetics · 2025
Typearticle
Language
FieldBiochemistry, Genetics and Molecular Biology
TopicMolecular Biology Techniques and Applications
Canadian institutionsnot available
Fundersnot available
KeywordsTranscriptomeGeneGene expressionRNA-SeqRegulation of gene expressionTranscription factorGene regulatory networkGrain yieldGene expression profiling

Abstract

fetched live from OpenAlex

The grain-filling period is a crucial stage that determines the yield and quality formation of wheat grains, involving a complex spatio-temporal regulation process. To gain a deeper understanding of the dynamic changes in gene expression and their molecular mechanisms during grain development, this study, based on multiple time points and multiple tissues, constructed a spatio-temporal transcriptome map of wheat grains covering the entire grain-filling period. Three key periods - early, middle, and late grain-filling - were selected, and the main tissues such as endosperm, embryo, and aleurone layer were collected respectively. High-quality transcriptome data were obtained by using high-throughput RNA sequencing technology. Through differential expression analysis, time series clustering, tissue-specific expression analysis and functional annotation, a large number of key genes and transcription factors related to carbon and nitrogen metabolism, starch synthesis, hormone regulation, stress resistance response, etc. were identified. This study also constructed multiple regulatory networks closely related to grain development and revealed the potential roles of non-coding Rnas and epigenetic factors in regulation, providing resource support for the analysis of the complex regulatory networks of grain development. This research will lay a solid foundation for the improvement of wheat quality, molecular breeding and the functional study of key regulatory genes during the grain-filling period.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.416
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.274
Teacher spread0.263 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

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