Ten simple rules for optimal and careful use of generative AI in science
Bibliographic record
Abstract
Modern AI technologies leverage natural language processing (NLP), a subfield of AI dedicated to understanding, interpreting, and generating human language for developing large language models (LLMs), which have significantly advanced the capabilities of AI systems. These models can perform complex language tasks such as text generation, summarization, translation, and sentiment analysis, with unprecedented accuracy. The two main kinds of pre-training LLMs are the BERT-like models (e.g., BioBERT, proteinBERT, and PubMedBERT used primarily for language understanding; and the GPT-like models (e.g., BioGPT and ChatGPT-4o) used primarily for language generation
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.016 | 0.042 |
| Meta-epidemiology (narrow) | 0.001 | 0.001 |
| Meta-epidemiology (broad) | 0.001 | 0.002 |
| Bibliometrics | 0.002 | 0.001 |
| Science and technology studies | 0.003 | 0.022 |
| Scholarly communication | 0.008 | 0.011 |
| Open science | 0.005 | 0.006 |
| Research integrity | 0.004 | 0.010 |
| Insufficient payload (model declined to judge) | 0.008 | 0.004 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".