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Record W4415727042 · doi:10.1016/j.jmr.2025.107991

Advancing quantitative NMR for high-precision isotopic analysis with rnmrfit 2.0

2025· article· en· W4415727042 on OpenAlexafffund
Kathy Sharon Isaac, Phuong Mai Le, Theodore Street, Akila Wijerathna-Yapa, Stanislav Sokolenko

Bibliographic record

VenueJournal of Magnetic Resonance · 2025
Typearticle
Languageen
FieldEnvironmental Science
TopicIsotope Analysis in Ecology
Canadian institutionsNational Research Council CanadaDalhousie University
FundersFaculty of Graduate Studies, Dalhousie UniversityNational Research Council CanadaNatural Sciences and Engineering Research Council of Canada
KeywordsRobustness (evolution)Accuracy and precisionAnalytical Chemistry (journal)NMR spectra databaseLine (geometry)SoftwareAnalytical techniqueData processing

Abstract

fetched live from OpenAlex

Quantitative NMR is widely utilized in isotopic ratio measurement for determining the origins and authenticity of chemical compounds. Achieving high precision required for such analyses depends on accurately separating signal from noise, which is essential for reliable quantification of resonance peak areas. In this study, we present rnmrfit 2.0, an NMR peak-fitting tool tailored for high precision isotopic analysis. This new version incorporates semi-global peak fitting with automated peak region selection, achieving greater robustness and computational efficiency than previously reported. The newly developed software was used to explore the impact of two common spectral processing techniques, line broadening and zero filling, as well as the choice of baseline span on peak fitting precision. All three were found to have a significant impact on fit precision, with optimal settings for line broadening and zero filling deviating from what is commonly recommended for 13C spectra, at 1-3 Hz and 0.5-1.0, respectively. Compared to commercial tools including TopSpin and MestReNova, rnmrfit demonstrated superior precision and trueness, achieving precision as low as 0.26% for 2H and 0.16% for 13C. The new version of rnmrfit is available as an open-source executable, offering a scalable solution for isotopic analysis with minimal user input, paving the way for more reliable isotopic quantification.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.007
metaresearch head score (Gemma)0.010
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.033
Threshold uncertainty score0.110

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0070.010
Meta-epidemiology (narrow)0.0020.002
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.001
Science and technology studies0.0010.001
Scholarly communication0.0030.003
Open science0.0030.002
Research integrity0.0020.003
Insufficient payload (model declined to judge)0.0330.019

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.005
GPT teacher head0.258
Teacher spread0.253 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2025
Admission routes2
Has abstractno

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