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Record W4416344598 · doi:10.1186/s13007-025-01471-9

PVP-40 mediated enhancement of mesophyll protoplast yield and viability for transient gene expression in black huckleberry

2025· article· en· W4416344598 on OpenAlexafffund
Sweety Majumder, Abir U. Igamberdiev, Samir C. Debnath

Bibliographic record

VenuePlant Methods · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant tissue culture and regeneration
Canadian institutionsAgriculture and Agri-Food CanadaMemorial University of Newfoundland
FundersAgriculture and Agri-Food CanadaNatural Sciences and Engineering Research Council of Canada
KeywordsProtoplastGene expressionYield (engineering)GenePhenotypeIsolation (microbiology)

Abstract

fetched live from OpenAlex

Abstract Background Black huckleberry ( Vaccinium membranaceum ) is a native fruit species of high nutritional, medicinal, ecological, and economic value. The black huckleberries, abundant in bioactive compounds, offer significant antioxidants and anti-inflammatory effects and play a key role in maintaining wildlife and forest ecosystems. Despite its importance, protoplast isolation and gene editing have not been reported in this species. These techniques are essential for functional genomics and crop improvement, but the recalcitrant nature of this species, complex genome, and variable ploidy present significant challenges for cellular and molecular manipulation. This study aimed to establish a reliable protocol for efficient mesophyll protoplast isolation and transient gene expression in V. membranaceum using in vitro-grown leaves. Results A systematic optimization of enzyme composition, osmotic concentration, antioxidant supplementation, and pH was undertaken to enhance protoplast yield and viability in V. membranaceum . The optimized enzymatic combination of 2% cellulase R-10, 1% hemicellulase, 1% Macerozyme R-10, and 1.5% pectinase facilitated efficient cell wall degradation while maintaining structural integrity. The inclusion of 0.6 M mannitol ensured osmotic stability, and 1% PVP-40 effectively suppressed phenolic oxidation, significantly improving protoplast viability. A near-neutral pH of 5.8 supported optimal enzyme activity without inducing cellular damage. Under these optimized conditions, 14 h enzymatic digestion produced 7.20 × 10⁶ protoplasts g⁻ 1 FW with 95.1% viability. Subsequent optimization of PEG-mediated transformation identified 40% PEG-4000 with 30 µg plasmid DNA as the most effective combination, achieving 75.1% transient expression efficiency. Nuclear localization of GFP-tagged proteins, confirmed by DAPI staining, validated the robustness of the optimized system. Conclusions This study presents a standardized, PVP-40–enhanced protocol for mesophyll protoplast isolation with notable yield and viability in V. membranaceum , supporting efficient transient gene expression. The method provides a robust platform for functional genomics, gene editing, and biotechnological applications in this underutilized species and other related plant species.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.021
GPT teacher head0.316
Teacher spread0.295 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2025
Admission routes2
Has abstractyes

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