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Record W4416811993 · doi:10.1038/s41467-025-66716-6

Little millet genome reveals evolutionary insights into tetraploid structure and genetic basis of micronutrient density

2025· article· en· W4416811993 on OpenAlexaff
Krishna Kishore Gali, ChuShin Koh, Tara Satyavathi Chellapilla, Ganapathy Kuyyamudi Nanaiah, K. B. Palanna, Morgan Kirzinger, Sandeep Nanjundappa, Sampath Perumal, Deekshitha Bomireddy, H. B. Mahesh, Harshal E. Patil, Raju Chaudhary, Loveleen Kaur Dhillon, Venkat Bandi, V. B. Reddy Lachagari, Surya Teja Veeramachaneni, Renuka Malipatil, Peng Gao, Shankar Pahari, Andrew Sharpe, Thomas D. Warkentin, Raju Soolanayakanahally, M. K. Prasannakumar, Nepolean Thirunavukkarasu, Sateesh Kagale

Bibliographic record

VenueNature Communications · 2025
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Micronutrient Interactions and Effects
Canadian institutionsAgriculture and Agri-Food CanadaNational Research Council CanadaSaskatchewan Research Council (Canada)Global Institute for Water SecurityUniversity of Saskatchewan
Fundersnot available
KeywordsGenomeGeneCropTelomereFood securityGenome-wide association studyGenomics

Abstract

fetched live from OpenAlex

Little millet is a hardy and nutrient-rich cereal which improves food and nutritional security in marginal environments. Despite its importance, genomic resources for this orphan crop have been limited. Here, we report a high quality, chromosome-scale genome assembly of little millet comprising 18 chromosomes and 59,045 genes. Eleven chromosomes are assembled from telomere to telomere, revealing an 850 Mb tetraploid genome that closely resembles broomcorn millet. Comparative analyses indicate early stages of diploidization, characterized by gene loss and subgenome-specific expression biases that vary across genes and tissues. Resequencing of 300 accessions uncovers extensive genetic diversity, including single-nucleotide polymorphism and structural variants. Genome-wide association studies identify genetic loci linked to grain micronutrient traits, including several associated with high iron content. These genomic and phenotypic resources provide a foundation for molecular breeding and marker-assisted selection, enabling the improvement of little millet as a climate-resilient crop to support global food and nutritional security.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.230
Teacher spread0.222 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2025
Admission routes1
Has abstractyes

Explore more

Same venueNature CommunicationsSame topicPlant Micronutrient Interactions and EffectsFrench-language works237,207