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Record W4416916567 · doi:10.1038/s41699-025-00636-3

Proteoliposomes on 2D-MoS₂ plasmonic nanocavities for enhanced Raman spectroscopy with machine learning-based identification and classification

2025· article· en· W4416916567 on OpenAlex
Sajad Shiekh, Yueru Zhou, Carolina del Real Mata, Mahsa Jalali, Jackson McCormack-Ilersich, Imaan I. Hosseini, Zezhou Liu, Matheus Azevedo Silva Pessôa, Seyed Vahid Hamidi, Laura Montermini, Janusz Rak, Walter Reisner, Sara Mahshid

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
fundA Canadian funder is recorded on the work.

Bibliographic record

Venuenpj 2D Materials and Applications · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicExtracellular vesicles in disease
Canadian institutionsMcGill University Health CentreMcGill University
FundersFonds de recherche du Québec – Nature et technologiesFondation Charles-BruneauCanadian Institutes of Health ResearchCancer Research SocietyMcGill University Health CentreCanada Foundation for InnovationPolytechnique MontréalUniversité du Québec à MontréalMcGill University
KeywordsSurface-enhanced Raman spectroscopyNanobiotechnologyExtracellular vesiclesRaman scatteringNucleic acidClassifier (UML)VesicleRaman spectroscopyPlasmonNanoparticle

Abstract

fetched live from OpenAlex

Synthetic proteoliposomes functionalized with disease-relevant surface markers offer a powerful platform for modeling biological vesicles such as lipid nanoparticles and extracellular vesicles. The simplified composition of proteoliposomes facilitates the design and interpretation of analytic approaches for classifying vesicles and characterizing their contents. Here, we present a library of synthetic proteoliposomes incorporating tumor-associated surface biomarkers—EGFR, α6β4, and αvβ5—and nucleic acid cargo, to mimic cancer-derived extracellular vesicle phenotypes. For molecular fingerprinting, we employed a custom-designed 2D-plasmonic nanocavity platform that enables high-resolution, label-free Surface-Enhanced Raman Spectroscopy (SERS). Integrated with supervised machine learning algorithms, including Random Forest Classifier (RFC) and Support Vector Machine (SVM), this system achieved robust classification of proteoliposome subtypes with test accuracies of 82% and 76%, respectively. Our results demonstrate the power of combining synthetic vesicle engineering with advanced optical sensing for capturing subtle biomolecular differences. This platform enables standardized, interpretable diagnostic readouts and offers a versatile tool for probing molecular interactions in lipid-based systems such as virus-like particles and nanotherapeutics.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.058
Threshold uncertainty score0.485

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.258
Teacher spread0.251 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it