MétaCan
Menu
Back to cohort
Record W4417050034 · doi:10.1038/s41467-025-66992-2

LANA-specific CD4+ effector T cells accumulate at the site of KSHV infection in humanized mice

2025· article· en· W4417050034 on OpenAlexaff
Michelle Böni, Shitao Peng, Danusia Vanoaica, Kareem Haal, Svenja L. Nopper, Lisa Rieble, Sandra L. Schmid, Alma Delia Valencia-Camargo, Angelika Holler, Hans J. Stauss, Christian Münz

Bibliographic record

VenueNature Communications · 2025
Typearticle
Languageen
FieldMedicine
TopicViral-associated cancers and disorders
Canadian institutionsInstitute of Infection and Immunity
FundersFunctional Genomics Center ZurichSwiss Vaccine Research InstituteSchweizerische Multiple Sklerose GesellschaftSchweizerische Akademie der Medizinischen WissenschaftenNational Science FoundationKrebsliga SchweizEidgenössische Technische Hochschule ZürichStaatssekretariat für Bildung, Forschung und InnovationSchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen ForschungRoman, Marga und Mareille Sobek StiftungUniversität ZürichPfizer
KeywordsImmunosurveillanceEffectorImmune systemAntigenT cellIn vivoIn vitroHumanized mouse

Abstract

fetched live from OpenAlex

Abstract Kaposi’s sarcoma-associated herpesvirus (KSHV) infection is linked with the development of life-threatening malignancies in elderly and immunocompromised hosts, suggesting tight control of the infection by T cell responses. T cells against KSHV, however, are barely detectable in infected individuals, and the mechanisms underlying immune recognition of KSHV-infected cells remain poorly understood. Here, we present publicly available sequences of T cell receptors (TCRs) targeting the KSHV latency-associated nuclear antigen (LANA/ORF73). By using these TCRs transgenically expressed on T cells as identifiers for KSHV-specific cells, we show that despite their failure to recognize KSHV-infected B cells in vitro, activated effector memory differentiated LANA-specific CD4 + T cells accumulate in vivo at infection sites in the preclinical infection model of humanized mice. This suggests more efficient antigen-presentation in vivo than by KSHV-infected B cells in vitro and highlights the possible contribution of CD4 + T cells to the immunosurveillance of latently infected B cells.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.010

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.018
GPT teacher head0.324
Teacher spread0.307 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2025
Admission routes1
Has abstractyes

Explore more

Same venueNature CommunicationsSame topicViral-associated cancers and disordersFrench-language works237,207