MétaCan
Menu
Back to cohort
Record W4417283211 · doi:10.14745/ccdr.v51i101112a04

Surveillance of laboratory exposures to human pathogens and toxins, Canada, 2024

2025· article· en· W4417283211 on OpenAlexafffundvenueabout
Audrey Gauthier, Antoinette Davis, Christine Abalos, Samuel Bonti‐Ankomah

Bibliographic record

VenueCanada Communicable Disease Report · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBacillus and Francisella bacterial research
Canadian institutionsPublic Health Agency of Canada
FundersPublic Health AgencyPublic Health Agency of Canada
KeywordsPublic healthPersonal protective equipmentHuman healthOccupational exposureQualitative analysisDisease transmission

Abstract

fetched live from OpenAlex

Background: Exposure incidents to human pathogens and toxins (HPTs) in licensed facilities in Canada are monitored by Laboratory Incident Notification Canada (LINC), a surveillance system that describes and identifies trends among exposure incidents in Canada using quantitative and qualitative data. Methods: Confirmed exposure incidents reported to LINC in 2024 were analyzed. The exposure incident rate was calculated and compared to previous years. A seasonality analysis compared monthly trends. Exposure incidents were described by sector, implicated HPTs, main activity, occurrence types, root causes, affected individuals and reporting delay. Text-based descriptions of exposure incidents underwent qualitative analysis. Results: In 2024, there were 71 confirmed exposure incidents affecting 132 individuals. There were 67.5 incidents per 1,000 active licences. Bacteria was the most commonly implicated HPT (64%). Microbiology (67.6%) was the primary activity during confirmed exposures. The public health sector had the highest incident rate and mean number of affected persons per active licence. The most frequently reported occurrence type and root cause was procedure-related (21.4%) and human factors (62%), respectively. Most affected individuals were technicians/technologists (76.5%). The median time between incident and reporting was five days. Conclusion: The exposure incident rate was higher in 2024 compared to the previous year. The public health sector had the highest incident rate between 2016-2024. Qualitative analysis revealed that working with cultures outside the biological safety cabinet and insufficient face-related personal protective equipment were common factors involved in confirmed exposure incidents.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.033
Threshold uncertainty score0.242

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0030.004
Science and technology studies0.0020.000
Scholarly communication0.0010.000
Open science0.0010.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.248
Teacher spread0.242 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2025
Admission routes4
Has abstractyes

Explore more

Same venueCanada Communicable Disease ReportSame topicBacillus and Francisella bacterial researchFrench-language works237,207