Horizontal gene transfer of the Pytheas sequence from Cuscuta to Orobanche via a host-mediated pathway
Bibliographic record
Abstract
Horizontal Gene Transfer (HGT) is a phenomenon of DNA transfer between organisms that does not involve a parent-offspring relationship. HGT is believed to play an important role in all groups of organisms, including plants, and especially in parasites. Here we describe a chain of transfers from Cuscuta (Convolvulaceae) to Orobanche rigens (Orobanchaceae)-both parasitic plants-via a host belonging to tribe Genisteae (Fabaceae). During its "journey" between genomes, the transferred sequence, which we named Pytheas, was altered by deletions, additions of new segments from the current genome, substitutions, and rearrangements. This is the first robustly documented case of a multi-step transfer pathway-involving one IGT and two HGTs-connecting three plant species. Specifically, this system involves a host plant mediated gene flow between two distinct parasites without involvement of transposable elements, the cox1 intron, or other vectors. This case also demonstrates how host-parasite interactions can facilitate the spread of genetic material between evolutionarily distant lineages.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.001 |
| Insufficient payload (model declined to judge) | 0.001 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".