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Pyrazoloquinazolinecarboxilate analogues inhibit nerve growth factor in vitro

2012· article· en· W63718459 on OpenAlexaff
Joseph K. Eibl, Bridget C. Strasser, Gregory M. Ross

Bibliographic record

VenueThe FASEB Journal · 2012
Typearticle
Languageen
FieldNeuroscience
TopicNerve injury and regeneration
Canadian institutionsNOSM UniversityLaurentian University
Fundersnot available
KeywordsTropomyosin receptor kinase ANerve growth factorIn vitroChemistryNeurotrophinReceptorAgonistSmall moleculeIn vitro toxicologyDocking (animal)Cell biologyBinding sitePharmacologyBiologyBiochemistryMedicine

Abstract

fetched live from OpenAlex

NGF is known to regulate the development and survival of select populations of neurons via its binding/activation of the TrkA and p75 NTR receptors. However, NGF dysregulation can result in debilitating pathologies. Thus, the identification of small molecules which inhibit NGF signaling have significant therapeutic potential. PD 90780, Ro 08‐2750, and ALE 0540 are small molecules that have been reported to bind and inhibit NGF activity. Importantly, the docking site of these compounds is hypothesized to occur at the loop I/IV cleft of NGF ‐ a region which is required for efficient and selective binding of a neurotrophin to its receptor(s). Molecular modeling predicts these molecules share conserved molecular features and have the ability to bind and modify the molecular topology of NGF. In order to understand the binding mechanism, we synthesized a pyrazoloquinazolinecarboxilate (PQC) analogue series and tested each compound in an NGF‐dependent PC12 cell differentiation assay. In vitro data confirms that the PQC analogues functionally inhibit NGF's agonist effects on PC12 cell differentiation. The results of this study provide evidence to refine the docking mode of PQC‐like compounds for the purposes of inhibiting NGF in vitro . In addition, we identified series analogue PQC 083 which is markedly better than previously described NGF antagonists.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.039
GPT teacher head0.271
Teacher spread0.232 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2012
Admission routes1
Has abstractyes

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