Additional file 1 of Ion channel profiling of the Lymnaea stagnalis ganglia via transcriptome analysis
Bibliographic record
Abstract
Additional file 1: Table S1. Published adult CNS RNA-seq libraries from selected model organisms used in this study. Table S2. Pfam IDs used to identify transcripts encoding ion channels and ionotropic receptors in the L. stagnalis CNS. Table S3. Summary of L. stagnalis CNS RNA-seq library metrics before and after reads correction and filtering. Table S4. Mapping statistics of the CNS RNA-seq libraries to L. stagnalis genome assembly. Table S5. Transcript assembly statistics for L. stagnalis CNS RNA-seq libraries. Table S6. Proportion of transcripts containing complete and fragmented ORFs as identified by the Evigene pipeline in the “okay” and “okalt” sequence sets. Table S7. Top 20 expressed transcripts in the adult mouse brain. Table S8. Top 20 expressed transcripts in the adult X. tropicalis brain. Table S9. Top 20 expressed transcripts in the adult zebrafish brain. Table S10. Top 20 expressed transcripts in the adult fruitfly brain. Table S11. Top 20 expressed transcripts in adult C. elegans neurons. Table S12. Enriched GO terms of mouse genes in orthogroups shared amongst vertebrate and invertebrate species. Table S13. Enriched Reactome pathways of mouse genes in orthogroups shared amongst all the species examined. Table S14. Enriched KEGG pathways of mouse genes in orthogroups shared amongst all the species examined. Table S15. Transcript factors whose binding motifs are enriched in the set of mouse genes in orthogroups shared amongst all the species examined. Table S16. Enriched GO terms of mouse genes in orthgroups shared amongst only the vertebrate species examined. Table S17. Enriched Reactome pathways of mouse genes in orthgroups shared amongst only the vertebrate species examined. Table S18. Enriched KEGG pathways of mouse genes in orthgroups shared amongst only the vertebrate species examined. Table S19. Enriched GO terms of fruit fly genes in orthgroups shared amongst only the invertebrate species examined.
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.001 | 0.009 |
| Meta-epidemiology (narrow) | 0.001 | 0.001 |
| Meta-epidemiology (broad) | 0.001 | 0.001 |
| Bibliometrics | 0.003 | 0.004 |
| Science and technology studies | 0.001 | 0.000 |
| Scholarly communication | 0.002 | 0.002 |
| Open science | 0.002 | 0.001 |
| Research integrity | 0.001 | 0.001 |
| Insufficient payload (model declined to judge) | 0.736 | 0.129 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".