Additional file 2 of Physiological and transcriptomic analyses provide insight into thermotolerance in desert plant Zygophyllum xanthoxylum
Bibliographic record
Abstract
Additional file 2: Table S1.Overview of RNA sequencing data. Table S2. Sequencing production statistics. Table S3. Summary of sequence annotation. Table S4. DEGs related to MYBs and HSFs in roots of Z. xanthoxylum under heat treatments. Fold change equals to log2 (the RPKM value of a gene undertreatment / the RPKM value of a gene under control condition) and indicates thetranscript abundance change of each DEGs. Homologous gene and homologous species were obtained by NCBI blast according to the sequence corresponding to the gene ID. Table S5. DEGs relatedto AP2/ERFs in roots of Z. xanthoxylum identified only at 40°C for 0.5 h. Foldchange equals to log2 (40°C-0.5 h RPKM / 25°C-0.5 h RPKM) and indicates thetranscript abundance change of each DEGs. Homologous gene and homologous species were obtained by NCBI blast according to the sequence corresponding tothe gene ID. Table S6. DEGs relatedto WRKYs in roots of Z. xanthoxylum identified only at 40°C for 0.5 h. Foldchange equals to log2 (40°C-0.5 h RPKM / 25°C-0.5 h RPKM) and indicates thetranscript abundance change of each DEGs. Homologous gene and homologousspecies were obtained by NCBI blast according to the sequence corresponding tothe gene ID. Table S7. DEGs related to HSFs in roots of Z. xanthoxylum identified only at 40°C for 0.5 h. Foldchange equals to log2 (40°C-0.5 h RPKM / 25°C-0.5 h RPKM) and indicates thetranscript abundance change of each DEGs. Homologous gene and homologous species were obtained by NCBI blast according to the sequence corresponding tothe gene ID. Table S8. DEGs relatedto HSPs in roots of Z. xanthoxylum identified under heat treatments. Foldchange equals to log2 (the RPKM value of a gene under treatment / the RPKM value of a gene under control condition) and indicates the transcript abundancechange of each DEGs. Homologous gene and homologous species were obtained by NCBI blast according to the sequence corresponding to the gene ID. Table S9. DEGs related to HSPs in roots of Z. xanthoxylum identified only at 40°C for 6 h. Fold change equals to log2 (40°C-6 h RPKM / 25°C-6 h RPKM) and indicates the transcript abundance change of each DEGs. Homologous gene and homologous species were obtained by NCBI blast according to the sequence corresponding to the gene ID. Table S10. DEGs related to PSI inleaves of Z. xanthoxylum identified only at 40°C for 0.5 h. Fold change equalsto log2 (40°C-0.5 h RPKM / 25°C-0.5 h RPKM) and indicates the transcript abundance change of each DEGs. Homologous gene and homologous species were obtained by NCBI blast according to the sequence corresponding to the gene ID. Table S11. The sequences used for RT-qPCR validation.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.001 | 0.007 |
| Meta-epidemiology (narrow) | 0.002 | 0.001 |
| Meta-epidemiology (broad) | 0.002 | 0.001 |
| Bibliometrics | 0.002 | 0.004 |
| Science and technology studies | 0.002 | 0.000 |
| Scholarly communication | 0.002 | 0.002 |
| Open science | 0.002 | 0.001 |
| Research integrity | 0.002 | 0.002 |
| Insufficient payload (model declined to judge) | 0.773 | 0.160 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".