ISIS-Fish Database: Life History and Spatial Distribution of Sole, Megrim, Anglerfish, Thornback ray, and Cuckoo ray Populations in the Bay of Biscay
Why this work is in the frame
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Bibliographic record
Abstract
In the context of the MACCO project (https://www.macco.fr/), we have developed an ISIS-Fish database with the objective of describing the spatial and monthly life cycle of 7 fish species of commercial interest in the mixed demersal fishery in the Bay of Biscay. In the case of megrim, cuckoo ray, thornback ray, anglerfish and sole, the population dynamics have been described in detail, both by age class and by global model. In addition, the distribution areas of these species according to their life stage have been mapped and included in the database. The settings of Hake and nephrops population dynamics are derived from a previous model (Seanoe https://doi.org/10.17882/86233). The database is accompanied by all the data and information necessary for the reproduction of the results and the assessment of the variability of the system. The biological parameters of each species are presented in summary species sheets with references, and in Excel files that contain all the variability observed in the literature and in the sea survey data. Our mapping work allow an appreciation of the variability between months and years, as illustrated through commented exploratory reports. At the end, the ISIS-Fish database is accompanied by a simulation and a technical validation report, which demonstrate the efficacy of the modelling process as parameterized. The data project includes 1) the ISIS-Fish database and all the ISIS-Fish files required to re-run the simulation of the 7 populations dynamics, 2) the species sheets for megrim, cuckoo ray, thornback ray, anglerfish and sole and 3) the R scripts to reproduce maps of the 5 species. All the data are reproductible using isis-fish-4.4.8.1 (isis-fish.org) and R 4.3.2. WARNING : Due to excessively long file paths, decompression may fail on Windows. To prevent this, please extract the archive directly to a root folder (e.g., C:\).
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Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.001 | 0.001 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.001 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.001 | 0.001 |
| Insufficient payload (model declined to judge) | 0.000 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it