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Record W6929615233 · doi:10.5061/dryad.xpnvx0kbv

Maximum carboxylation rate estimation with chlorophyll content as a proxy of rubisco content

2020· dataset· en· W6929615233 on OpenAlexaffabout

Bibliographic record

VenueZenodo (CERN European Organization for Nuclear Research) · 2020
Typedataset
Languageen
FieldPharmacology, Toxicology and Pharmaceutics
TopicAdvanced Drug Delivery Systems
Canadian institutionsUniversity of Toronto
FundersMinistry of Science and Technology of the People's Republic of ChinaNational Natural Science Foundation of China
KeywordsPhotosynthesisRuBisCOChlorophyllBiosphereTemperate climateChlorophyll aBiosphere modelCarbon cycleCarboxylation

Abstract

fetched live from OpenAlex

The maximum carboxylation rate (Vcmax) is a key parameter in determining the plant photosynthesis rate per unit leaf area. However, most terrestrial biosphere models currently treat Vcmax as constants changing only with plant functional types, leading to large uncertainties in modelled carbon fluxes. Vcmax is tightly linked with Ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco). Here we investigated the relationship between leaf chlorophyll content and Rubisco (Chl-Rub) within a winter wheat paddock. With chlorophyll as a proxy of Rubisco, a semi-mechanistic model was developed to model Vcmax25. The Chl-Rub relationship was validated using measurements in a temperate forest in Canada. The results showed that Rubisco was strongly correlated with chlorophyll (R2 = 0.96, p < 0.001) for winter wheat, due to the absorption of light energy by chlorophyll and the amount of CO2 catalysed by Rubisco are tightly coupled. Incorporating the Chl-Rub relationship into the semi-mechanistic model, the root mean square error of modelled Vcmax25 was the lowest among all estimation models. The slopes of Chl-Rub relations were almost identical for the winter wheat and temperate forest, demonstrating the potential for using leaf chlorophyll content as a proxy of leaf Rubisco in modelled Vcmax25 at large spatial scales. We anticipate that improving Vcmax25 estimates over time and space will reduce uncertainties in terrestrial biosphere models and improve the estimates of global carbon budgets.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Insufficient payload (model declined to judge)
Consensus categoriesInsufficient payload (model declined to judge)
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Dataset · Consensus signal: Dataset
Teacher disagreement score0.028
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0050.009

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.166
GPT teacher head0.359
Teacher spread0.193 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; both teacher heads agree on what is shown here.

Study designNot applicable
Domainnot available
GenreDataset

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2020
Admission routes2
Has abstractyes

Explore more

Same venueZenodo (CERN European Organization for Nuclear Research)Same topicAdvanced Drug Delivery SystemsFrench-language works237,207