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Record W6930801930 · doi:10.5281/zenodo.13788210

SFPsimulations

2024· other· en· W6930801930 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueZenodo (CERN European Organization for Nuclear Research) · 2024
Typeother
Languageen
FieldEngineering
TopicAdvanced Data Processing Techniques
Canadian institutionsUniversity of Winnipeg
Fundersnot available
KeywordsDrosophila melanogasterMelanogasterGeneDrosophila pseudoobscuraDrosophila (subgenus)

Abstract

fetched live from OpenAlex

Seminal fluid proteins (Sfp) are central in animal reproduction, from insects to mammalian species. In thecontext of the analysis of the functional properties of the Sfps from an evolutionary perspective, weinvestigated how they interact, paying attention to the architecture of the resulting network. The topologyof the Sfp proteome consists in several subnetworks, which were examined based on the evolutionaryage composition of their constituent genes, i.e. when these genes appeared during the fly phylogeny. Sfp-encoding genes were categorized based on their evolutionary age within five age classes: class A, genespresent before the Drosophila radiation; class B, genes originated before the split between the Drosophilaand Sophophora subgenera; class C, genes formed in early divergent lineages leading to D. willistoni andD. pseudoobscura species groups; class D, genes originated in the melanogaster species group; andclass E, genes present only in the D. melanogaster species subgroup, including the simulans speciescomplex and D. melanogaster. Through Monte Carlo simulations, we interrogated whether the observedevolutionary age composition of different subnetworks was expected by chance alone or there was asignificant enrichment for particular age classes in different subnetworks of the Sfp proteome.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesInsufficient payload (model declined to judge)
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Other · Consensus signal: Other
Teacher disagreement score0.099
Threshold uncertainty score0.976

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0250.036

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.029
GPT teacher head0.263
Teacher spread0.234 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it