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Record W6931480049 · doi:10.5281/zenodo.6069371

Egmundella producta G.O. Sars 1874

2016· article· de· W6931480049 on OpenAlexaboutno aff

Bibliographic record

VenueZenodo (CERN European Organization for Nuclear Research) · 2016
Typearticle
Languagede
FieldBiochemistry, Genetics and Molecular Biology
TopicGene expression and cancer classification
Canadian institutionsnot available
Fundersnot available
KeywordsSequence (biology)Gene sequenceCoronavirus disease 2019 (COVID-19)Population

Abstract

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Egmundella producta (G.O. Sars, 1874) Calycella producta G.O. Sars, 1874: 118, pl. 5 figs 6-8. ‒ Hincks, 1874a: 134. ‒ Verrill, 1879: 17. ‒ Storm, 1879: 26. ‒ Broch, 1907: 7. Manuscript accepted 0 3.02. 2016 DOI: 10.5281/zenodo.155157 Lovenella producta. ‒ Segerstedt, 1889: 12. ‒ Jäderholm, 1909: 79. ‒ Kramp, 1935: 140, fig. 57E. ‒ Fraser, 1937: 96, pl. 19 fig. 102. ‒ Fraser, 1944: 175, pl. 31 fig 149. ‒ Schuchert, 2000: 423. ‒ Schuchert, 2001: 54, fig. 39. ‒ Calder, 2012: 22, fig. 21. Campanulina producta. ‒ Bonnevie, 1899: 73. ‒ Bonnevie, 1901:10. ‒ Broch, 1903: table. ‒ Stechow, 1922: 146. not Lovenella producta. ‒ Fraser, 1911: 44, pl. 3 figs 7-10. ‒ Fraser, 1914: 159, pl. 18 fig. 64. [in part Egmundella gracilis Stechow, 1921] ? Lovenella producta. ‒ Fraser, 1938: 40. ? not Campanulina producta. ‒ Leloup, 1940: 8, pl. 1 fig. 4. ? Egmundella grimaldii Leloup, 1940: 7, pl. 1 fig. 3. ? not Opercularella producta. ‒ Vervoort, 1966: 111, fig. 12a. ‒ Verwoort, 1985: 279. Material examined: Syntypes, UZMO B1378, Sars collection, as Calycella producta; Norway, Bodø and Lofoten, 80-100 f (= 146-183); identified by G. O. Sars, numerous hydranths, relatively well preserved. MHNG-INVE-91796; Norway, North of Litlesotra Island, 60.4083°N 05.1167°W, 100 m depth, on tube of Sabella pavonia; collected 22.04.2015; with 3 gonothecae; part of this material processed to permanent microslide preparations; DNA isolate 1097 made from a few hydranths, 16S sequence KU512889; DNA isolate 1098 made from a gonotheca content, 16S sequence identical to KU512889. MHNG-INVE-25136; Iceland, 64.842°N 24.217°W, 220 m depth, temperature 7.1°C; collection date 0 5.09.1990. ZMUC BIOFAR 100; Faroe Islands, 61.5878°N 6.2847°W, 283 m depth, temperature 6.8°C; collected 24.07.1987; without gonothecae. ZMUC BIOFAR 165; Faroe Islands, 62.1844°N 4.9667°W, 184 m depth, temperature 7.9°C, on hydroids; collected 07.05.1988; without gonothecae. ZMUC BIOFAR 517; Faroe Islands, 60.6039°N 11.6364°W, 1099 m depth, temperature 5.6°C; collected 27.07.1989; without gonothecae. ZMUC BIOFAR 523; Faroe Islands, 60.7114°N 12.6075°W, 606 m depth, temperature 8.5°C, on polychaete tube made of sand grains; collected 28.07.1989; without gonothecae. ZMUC BIOFAR 524; Faroe Islands, 0.7364°N 12.6222°W, 702 m depth, temperature 7.9°C, on hydroid Symplectoscyphus tricuspidatus; collected 28.07.1989; without gonothecae. Description: Colony stolonal, stolons tubular, diameter 90-140 μm, irregularly corrugated, ramified, creeping, forming a reticulated network. Stolons usually bear on upper surface a row of widely spaced nematothecae, number variable between colonies, nematothecae about 60-100 μm high, on short pedicels, bodies egg-shaped, distally truncate, lumen filled with large haplonemes (Fig. 1 B). The hydrothecae are not evenly distributed and tend to arise in clusters of 3-6, total height of hydrotheca and pedicel very variable 3-6 mm (Fig. 1 A), diameters of pedicels 80-90 μm. Pedicels straight, smooth for the most part but regularly some short, annulated stretches present, this especially at base. Hydrotheca elongate, height 0.5-0.8 mm from diaphragm to operculum tip, walls thin, widest at base of operculum (diameter 0.28-0.32 mm), tapering towards below, and basally merging imperceptibly into pedicel, with no node at base of hydrotheca. Operculum low, conical, formed by about 10-12 triangular flaps. In fresh and alcohol preserved material, the operculum is not delimited from the hydrothecal wall by a crease line. A crease line can appear when the operculum is inwardly folded into the hydrotheca (Fig. 1 A). Towards base of hydrotheca a very fine, membranous, funnelshaped diaphragm, which is only discernible while there is a living polyp in the hydrotheca. Gonothecae arise directly from stolons (Fig. 1 C, E), fanshaped, strongly flattened (Fig. 1 F), the thickness of the gonotheca in the proximal part is about 1/8 to 1/10 of the height, thinning out towards the periphery, with a large opening spanning from one side to the other (Fig. 1 E-F), margin of opening irregularly serrated, possibly resulting from rupture of perisarc at maturity, lower walls of gonotheca undulated, pedicel short. Size of gonotheca variable, observed range (n=3, newly collected material) was 1.5 x 1.7 mm to 4.4 x 4.6 mm (height x maximal width). Only largest gonotheca contained soft tissue, represented by a very young and an advanced gonophore, gonophore a medusoid or a medusa. Nematocysts: - large merotrichous and atrichous haplonemes (Fig. 3 A-B, E-F), concentrated in nematothecae but also present in hydranths, stolons and gonophores, (31-35) x (3.5-4) μm, straight or curved, thread of discharged capsules thin, tapering inconspicuously, some capsules without barbs (Fig. 3 F), some with a stretch of about 30 μm beset with strong barbs, about 40 μm away from capsule (Fig. 3 E). - spindle shaped isorhizas (Fig. 3 C), concentrated in tentacles, but also elsewhere, (7.5-9) x (1.5-2) μm, in light microscopy lacking visible spines. - rare, small, unidentifiable capsules (Fig. 3 D), (4-5) x (1-1.5) μm, may be developmental stages. Biology: Grows on a variety of substrates like other hydroids (especially Tubularia indivisa), tubes of polychaetes, and ascidians. Depth range of reliablyidentified material 6-750 m, usually below 80 m in boreal regions. Distribution: In cool temperate to cold waters of the North Atlantic, rarely reported from the high Arctic: Norway (Sars, 1874; Storm, 1879; Bonnevie, 1899, 1901), Sweden (Segerstedt, 1889), Denmark (Kramp, 1935), North Sea (Broch, 1903), Iceland (Schuchert, 2000, 2001), North-western Atlantic (Verrill, 1879; Fraser, 1944). The identities of records from deep waters of the Gulf of Gascogne and the Azores (Leloup, 1940; Vervoort, 1985) are uncertain. Not reported so far from the Russian Arctic Sea (Antsulevich, 2015) or other high arctic waters (Ronowicz et al., 2015), except for one record by Broch (1907) from the Jones Sound (south of Ellesmere Island, Canada). Type localities: Norway, Nordland county, Bodø and Lofoten Islands, 146-366 m depth, on Tubularia indivisa and a serpulid tube. Remarks: The presence or absence of nematothecae in campanulinid hydroids is usually considered to be a genus level difference (Levinsen, 1893; Jäderholm, 1909; Stechow, 1921; Bouillon et al., 2006). The genus Lovenella Hincks, 1868 has as type species Campanularia clausa Lovén, 1836 by monotypy, a species with no stolonal nematothecae. Contemporary authors (e. g. Cornelius, 1995a; Schuchert, 2001; Calder, 2012) did nevertheless not apply this and continued to use the combination Lovenella producta (G.O. Sars, 1874), despite the fact that nematothecae were always found. The reason for doing so was because the species remained incompletely described and it was assumed that the type material does not have stolonal nematothecae as these were not mentioned by Sars (1874). However, the re-examination of the syntypes showed that stolonal nematothecae are present in both of them. According to Bouillon et al. (2006) ‒ currently the most comprehensive and widely accepted taxonomic system of the Hydrozoa ‒ the species must thus be placed in the genus Egmundella Stechow, 1921 (Stechow, 1921: 225; type species Egmundella gracilis Stechow, 1921 by original designation). A comparison with the syntype specimens made it evident that the new material from Norway is indistinguishable from them, the hydrothecae being only slightly shorter. The syntype material, as already stated by Sars (1874), is composed of specimens from at least two localities (Bodø and Lofoten Islands), each attached to a different substrate (Tubularia indivisa stem fragments and a serpulid tube fragment, respectively). The material is relatively well preserved, though most hydrothecae are damaged. The stolons bear numerous nematothecae, although their local density is variable. Since they were not mentioned by Sars (1874), it is assumed that he must have overlooked them. Considering the quality of the optical instruments available at his time, this is not surprising, as they are inconspicuous structures that need a careful examination to be discovered. Sars (1874) stated that the type material had no gonothecae. However, I found one small (1 mm), developing gonotheca on the colony growing on the serpulid tube. The gonotheca is comparatively smaller, but otherwise morphologically similar to those observed in the new material (Fig. 1 C, 2C). The gonotheca in the type material seems to be a younger stage than the one depicted in Fig. 1 C and apparently there is no opening yet. There is a visible gonophore inside it, but no internal structures could be identified. Unfortunately, the content of the gonotheca in the new material could not be identified with sufficient precision. The material had to be preserved immediately because the tissues started to deteriorate due to damage suffered during the collecting process. Only the largest gonotheca contained soft tissue, represented by one advanced gonophore and a very young one. The gonophore was provisionally identified as a medusoid with developed gonads, but it is not excluded that it could further develop into a medusa with tentacles. New observations based on living colonies are needed. The shape of the gonothecae observed in the material of the present study matches only partially Storm’s (1879) description. Storm mentions a short aperture, while in the present material there is a wide distal opening. Without any illustration of Storm’s material it is difficult to assess its validity and significance. Also Vervoort (1985, as Verwoort) described gonothecae in material he tentatively identified as L. producta: “... hyaline, sacshaped body, about as long as the hydrothecal pedicel and attached to the stolon by means of a very short collarshaped pedicel. The lateral wall is slightly wrinkled; terminally it is open, with a slightly folded apical portion ...”. Also this descri

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How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.010
Threshold uncertainty score0.033

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0010.000
Scholarly communication0.0000.001
Open science0.0000.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0100.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.032
GPT teacher head0.253
Teacher spread0.221 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Published2016
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