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Record W6931621454 · doi:10.5281/zenodo.8010995

Developing an Interactive Data Deposit Decision Tree

2023· article· en· W6931621454 on OpenAlexaff

Bibliographic record

VenueZenodo (CERN European Organization for Nuclear Research) · 2023
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMicroRNA in disease regulation
Canadian institutionsUniversity of Toronto
Fundersnot available
KeywordsSelection (genetic algorithm)Focus (optics)Decision treeTree (set theory)Preference elicitationDecision support system

Abstract

fetched live from OpenAlex

A number of resources exist that guide researchers to select an appropriate repository in which to deposit their research data. Most focus repository selection through a specific lens, such as funder requirements, FAIR principles, or sensitive data. This project represents an attempt to develop one interactive tool that lets user needs determine the best path. Three objectives guided us: (1) our Decision Tree needed to account for institutional and national contexts, including funder requirements, legal and ethical frameworks, and institutional practices; (2) we wanted to help researchers make informed decisions about depositing their data and cultivate a deeper understanding of the many factors that might impact their choice; and (3) we wanted to develop a flexible and interactive tool that responds to researchers’ varying priorities and motivations. Our Decision Tree simultaneously helps researchers make the right data repository selection, introduces users to the research data landscape, and streamlines consultation processes and library workflows.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.033
metaresearch head score (Gemma)0.068
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: Reproducibility · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.967
Threshold uncertainty score0.177

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0330.068
Meta-epidemiology (narrow)0.0010.002
Meta-epidemiology (broad)0.0020.003
Bibliometrics0.0070.005
Science and technology studies0.0040.002
Scholarly communication0.0090.009
Open science0.0040.007
Research integrity0.0020.004
Insufficient payload (model declined to judge)0.0190.005

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.062
GPT teacher head0.309
Teacher spread0.248 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designTheoretical or conceptual
DomainReproducibility
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2023
Admission routes1
Has abstractyes

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