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Molecular Cloning and Expression Characteristics of otx2 and eya1 During the Early Development of Seriola aureovittata

2025· article· en· W6944631672 on OpenAlexaff

Bibliographic record

VenueDOAJ (DOAJ: Directory of Open Access Journals) · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicDevelopmental Biology and Gene Regulation
Canadian institutionsYellow Island Aquaculture (Canada)
Fundersnot available
KeywordsPelagic zoneOpen reading frameAquacultureAmino acidHomeoboxGeneMolecular cloning

Abstract

fetched live from OpenAlex

Yellowtail kingfish (Seriola aureovittata) is a pelagic migratory fish species with a global distribution. In recent years, interest in the aquaculture of this species has increased worldwide because of its high flesh quality and fast growth. As a large and fast-swimming pelagic fish, yellowtail kingfish has good adaptability to land-based industrial recirculating and offshore net cage modes. With the development of aquaculture technology, more attention has been paid to animal behavior research, which will promote the welfare level in aquaculture. Light, sound, temperature, density, and flow velocity are important factors affecting the welfare of farmed fish. The development, morphological structure, and regulatory mechanism of sensory organs, including visual, gustatory, olfactory, and auditory organs, are becoming increasingly important in the study of animal behavior.Orthodenticle homeobox 2 (OTX2) and eye absent 1 (EYA1) play important roles in regulating the ontogeny, differentiation, and development of visual, gustatory, olfactory, and auditory organs. In order to study the expression characteristics of otx2 and eya1 in yellowtail kingfish during early development, otx2 and eya1 were identified from brain tissue with specific kits. The lengths of otx2 and eya1 open reading frame domain were 876 and 1, 962 bp encoding 291 and 653 amino acids, respectively. Among these, OTX2 consists of a homologous domain from the 42nd to 93rd amino acids and a TF-Otx domain containing 82 amino acids; the C-terminal of EYA1 is an EYA domain encoding 246 amino acids. These two genes had a wide range of tissue expression characteristics, including in eye, brain, pituitary, head kidney, heart, liver, spleen, kidney, mid-gut, and ovary tissues. The highest expression level of otx2 was obtained in eye tissues followed by brain tissues, and the values in these two tissues were significantly higher than those in other tissues (P < 0.05). The highest expression level of eya1 was obtained in pituitary tissues followed by ovary tissues, and the values in these two tissues were significantly higher than those in other tissues (P < 0.05). During embryonic development, expression of otx2 and eya1 could be detected at each stage, and levels were upregulated at a late stage, during which otx2 and eya1 reached peak values at hatching stage and when the embryo encircled 4/5 of the yolk sac, respectively. At the larval and juvenile stages, the expression of otx2 and eya1 could be detected, with high expression levels at the early stage, during which the expression level of otx2 was first upregulated and then downregulated; the expression level at 3–25 dph (days post-hatching) was significantly higher than those at 1 dph and 30–60 dph, with the highest level reached at 20 dph (P < 0.05). The expression of eya1 showed a downward trend, with the highest level reached at 1 dph (P < 0.05); the expression levels at 30–60 dph were significantly lower than those at 7–25 dph (P < 0.05). This study provides a molecular basis for understanding the physiological functions of otx2 and eya1 during the development of sensory organs and the regulatory mechanisms in yellowtail kingfish.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.212
Threshold uncertainty score0.448

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.051
GPT teacher head0.453
Teacher spread0.402 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2025
Admission routes1
Has abstractyes

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