Eimeria tenella whole genome NGS, unsporulated oocysts and oocysts at 0 and 8 hours of sporulation
Bibliographic record
Abstract
Unsporulated Eimeria tenella oocysts (0 hours of sporulation elapsed): 22-024020-0001_S1_L001_R_001.fasta Eimeria tenella oocysts at 8 hours of sporulation elapsed: 22-024020-0002_S2_L001_R_001.fasta Six additional timepoints were sequenced, see: DOI: 10.17632/547wwd5jfr.1 (Eimeria tenella whole genome NGS, oocysts at 16 hours of sporulation and 24 hours of sporulation) DOI: 10.17632/962ypgjnmj.1 (Eimeria tenella whole genome NGS, oocysts at 32 hours of sporulation and 64 hours of sporulation) DOI: 10.17632/frxnm8vyys.1 (Eimeria tenella whole genome NGS, oocysts at 381 hours of sporulation and 835 hours of sporulation) Relative abundance of each organellar genome was estimated based on the proportion of reads at each time point that mapped to the mitochondrial, apicoplast, and nuclear genomes, see: Kruth, P.S. (2024). Molecular Investigation of Exogenous Stages of Eimeria tenella: Expression of Fragmented Mitochondrial rDNA, Organellar Genome Dynamics, and Development of a Transcriptional Activity-Based Assay for Measuring Oocyst Viability. [Doctoral dissertation, University of Guelph, Ontario Veterinary College, Department of Pathobiology]. UofG Atrium, https://hdl.handle.net/10214/28208.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.001 |
| Meta-epidemiology (narrow) | 0.001 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.001 | 0.001 |
| Science and technology studies | 0.001 | 0.000 |
| Scholarly communication | 0.001 | 0.000 |
| Open science | 0.001 | 0.000 |
| Research integrity | 0.001 | 0.001 |
| Insufficient payload (model declined to judge) | 0.019 | 0.010 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".