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Record W6992682164

Lipopolysaccharide synthesis and characterization of a core oligosaccharide kinase essential to outer membrane stability

2001· dissertation· en· W6992682164 on OpenAlexaff

Bibliographic record

VenueThe Atrium (University of Guelph) · 2001
Typedissertation
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBacterial Genetics and Biotechnology
Canadian institutionsBibliothèque et Archives nationales du Québec
Fundersnot available
KeywordsGlycosyltransferaseMutantBacterial outer membranePhosphorylationGeneHomology (biology)OperonBiosynthesis
DOInot available

Abstract

fetched live from OpenAlex

In 'Escherichia coli' and 'Salmonella enterica', genes for assembly of the lipopolysaccharide (LPS) core region are clustered on the chromosome in three adjacent operons. The central of these operons encodes glycosyltransferases and other enzymes responsible for assembling one of seven distinct core structures. In 'E. coli' with core type R1, there are nine "'waa'" genes in the central core biosynthesis operon. In order to assign function to each of these genes, non-polar mutations were constructed in each, and the resulting mutant LPS core structures were determined by chemical methods. In 'E. coli' and 'S. enterica', phosphoryl substituents in the LPS core region are essential for the formation of a stable outer membrane. Of particular note, therefore, mutations in four genes characterized by the above approach were shown to affect the degree of core phosphorylation. Two of these genes ('waaY' and 'waaP') were presumed to be involved directly in phosphotransfer reactions based on their weak homology to eukaryotic kinases. The remaining two genes ('waaQ ' and 'waaG') were shown to encode glycosyltransferases acting near phosphorylation sites, and are thus likely required to fulfill the substrate specificity requirements of the phosphorylating enzymes. Mutant derivatives with altered core phosphorylation were analyzed for outer membrane stability by novobiocin and SDS sensitivity testing, and were shown to be more susceptible to these agents than the parent strain. In general, decreased core phosphate substitution resulted in greater membrane instability. In particular, mutation of 'waaP', resulting in a core completely devoid of phosphate, caused a dramatic increase in antibiotic susceptibility. To assess how WaaP and LPS core phosphorylation influence the biology of an intracellular pathogen, a 'waaP' mutant was constructed using an invasive strain of 'S. enterica', and this mutant was tested for virulence using mouse models of infection. The results were unequivocal; mutation of 'waaP' completely abrogated virulence. Given these data, the WaaP protein provides a novel potential target for the development of antibiotics. To further characterize WaaP, the protein was purified, and its enzymatic activity was reconstituted 'in vitro '. Purified WaaP was shown to catalyze the incorporation of 33P from [[gamma]-33P]ATP into phosphate-deficient acceptor LPS.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.002

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.214
Teacher spread0.204 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2001
Admission routes1
Has abstractyes

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