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Record W6995938107

Potential association between the functional variant RS2043556 in MIR605 gene and development of multiple primary tumors in TP53 P.ARG337HIS mutation carriers pacientes do Rio Grande do Sul

2020· other· en· W6995938107 on OpenAlexaboutno aff

Bibliographic record

VenueLume (Universidade Federal do Rio Grande do Sul) · 2020
Typeother
Languageen
FieldDentistry
TopicDental Health and Care Utilization
Canadian institutionsnot available
Fundersnot available
KeywordsGermlineGenotypeAlleleSNPGermline mutationMutationGeneGenetic predispositionFounder effect
DOInot available

Abstract

fetched live from OpenAlex

Li-Fraumeni and Li-Fraumeni-like syndromes (LFS/LFL) are cancer predisposition syndromes associated with TP53 germline mutations and characterized by high risk for multiple early-onset cancers.In Southern and Southeastern Brazil, a founder germline mutation located in the oligomerization domain of the TP53 gene and with incomplete penetrance, c.1010G>A (p.Arg337His), has been detected in many families showing a predisposition to at least some of the cancers of the LFS/LFL spectrum.Recently, the functional variant rs2043556 (A>G), located in MIR605 gene, was identified as a novel genetic modifier of the LFS phenotype in families with classical hotspot TP53 mutations (DNA binding domain mutations).Indeed, miR-605 is a component in the p53 regulatory network, being transcriptionally activated by p53 and post-transcriptionally repressing Mdm2 (a well-known negative regulator of p53 expression levels and activity).Here, we determined the frequency and explored possible effects of the SNP rs2043556 on clinical manifestations of Brazilian individuals carrying TP53 p.Arg337His mutation.Genotyping was performed by allelic discrimination using TaqMan assay and statistical analyzes were conducted on SPSS V.18.0 software.Among 233 patients harboring the founder TP53 mutation, the variant G-allele was detected in 132 (56.7%), of which 23 in homozygosis (GG genotype, 9.9%).Although this SNP was associated with an earlier mean age of tumor onset in LFS patients (classic phenotype) from a Canadian population, this effect was not replicated in our cohort (P = 0.6).A possible reason for this conflicting result is because there were no LFS/LFL families with this highly-prevalent Brazilian mutation evaluated in the previous study.The MIR605 rs204356 genotype was also not associated with the tumor type diagnosed in TP53 p.Arg337His mutation carriers (P = 0.4).However, the GG genotype showed a borderline modifier effect (P = 0.049) to the manifestation of multiple primary tumors in the same group.Among these TP53 p.Arg337His and rs204356[GG]-positive patients with tumor diagnosis in multiple primary sites, a female patient developed very early-onset breast and thyroid cancers (at 23 and 25 years, respectively).To our knowledge, this is the first description of LFS/LFL patients with the variant G-allele of MIR605 rs204356 in homozygosis.Further functional studies are necessary to clarify the effects of this variant in cancer pathways.Uniterms

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.035
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.214
Teacher spread0.205 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2020
Admission routes1
Has abstractyes

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