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Record W7000439356

Evaluating the impact diminished SKP1 and CUL1 expression have on chromosome instability and high-grade serous ovarian cancer pathogenesis

2019· dissertation· en· W7000439356 on OpenAlexaff

Bibliographic record

VenueMspace (University of Manitoba) · 2019
Typedissertation
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMicrotubule and mitosis dynamics
Canadian institutionsUniversity of Manitoba
Fundersnot available
KeywordsNucleofectionTSG101OlaparibGloomLafora diseaseRomidepsin
DOInot available

Abstract

fetched live from OpenAlex

High-grade serous ovarian cancer (HGSOC) is the most common and lethal ovarian cancer subtype. Chromosome instability (CIN; an increased rate of chromosome gains and losses) is believed to play a fundamental role in the development and evolution of HGSOC. The current study aims to evaluate the underlying mechanisms responsible for inducing CIN in HGSOC. Importantly, overexpression of Cyclin E1 protein induces CIN and genomic amplification contributes to HGSOC pathogenesis in ~20% of patients. Misregulation of Cyclin E1 at the protein level (i.e. aberrant protein turnover) is also expected to be causally linked to CIN and HGSOC development, but has never been evaluated in this context. Cyclin E1 levels are normally regulated in a cell cycle-dependent manner by the SCF (SKP1-CUL1-FBOX) complex, an E3 ubiquitin ligase that includes the proteins SKP1 and CUL1. Conceptually, loss of SCF complex function stemming from diminished SKP1 or CUL1 expression is predicted to underlie increases in Cyclin E1 protein levels and induce CIN. This study evaluates the impact of diminished SKP1 or CUL1 expression in a fallopian tube secretory epithelial cell model (a cell of origin for HGSOC) using two complementary approaches (siRNA and CRISPR/Cas9). Single-cell quantitative imaging microscopy approaches were employed to evaluate changes in CIN-associated phenotypes in response to diminished SKP1 or CUL1 expression. Our data identify SKP1 and CUL1 as novel CIN genes in HGSOC precursor cells that may contribute to the early development and pathogenesis of HGSOC.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.018
GPT teacher head0.271
Teacher spread0.253 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2019
Admission routes1
Has abstractyes

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