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Record W7015013796

The role of Lkb1 in preimplantation mouse embryos

2013· dissertation· en· W7015013796 on OpenAlexaff

Bibliographic record

VenueeScholarship@McGill (McGill) · 2013
Typedissertation
Languageen
FieldMedicine
TopicGenetic factors in colorectal cancer
Canadian institutionsMcGill University
Fundersnot available
KeywordsEpiblastEmbryoPhenotypeMutantEmbryonic stem cellCellEmbryogenesisBlastocystEndoderm
DOInot available

Abstract

fetched live from OpenAlex

LKB1 is a tumor suppressor gene associated with a rare autosomal dominant disorder known as Peutz-Jeghers Syndrome (PJS) which is characterized by the formation of benign gastrointestinal polyps and an increased risk of development of malignant tumors. It has been shown that Lkb1 is involved in various cellular events such cell cycle regulation, cell polarity formation and epithelial morphogenesis, and energy metabolism. The role of Lkb1 in development was examined in Lkb1 KO mice. Interestingly, the homozygous mutant embryos survive up to around E9.5 and die due to vasuclogenesis defects. Although cell polarity and epithelial morphogenesis play important roles in cell allocation and lineage specification in the preimplantation embryos, no clear defect was observed.We hypothesize that lack of early phenotypes in the Lkb1 mutant embryo is because maternal loaded Lkb1 protein and mRNA are sufficient for the embryo to go through the early stages. To test this, we generated maternal/zygotic null Lkb1 embryos using the oocyte specific Cre line, ZP3-Cre (a recombinase enzyme that is active in the oocytes) with the floxed Lkb1 conditional KO mouse line. Interestingly, both maternal/zygotic-deleted homozygous (MZLkb1-/-) embryos and maternal-deleted heterozygous (MLkb1+/-) embryos established epithelial layers at E3.5 and E4.5 with clear apico-basal polarity. Although the first three cell lineages, trophoectoderm, epiblast and primitive endoderm were formed, we found a bias towards a particular cell fate; the PE lineage, at E3.5 in the both MLkb1+/- and MZLkb1-/- embryos.We also found changes in cell allocation and ICM morphology in the blastocyst. We quantified those changes and found that there is an observable spreading of the epiblast and PE tissue in both the MLkb1+/- and MZLkb1-/-) mouse embryos. Taken together, I conclude that Lkb1 does play a role in the early stages of development of the mouse embryos where it affects cell morphology and lineage specification.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.001
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.250
Teacher spread0.239 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2013
Admission routes1
Has abstractyes

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